Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g01257 ATGGCTGTCTCACTTTTGGGTCCTCTGGTTATTACCACCTTGCTTTGCATGCAAACTCTGGCAGATGCTTCATGCACTGATTGTTTTGTTCAATCTCGAGCAGAATATTACCCGAACTCTGAAGTAAATGGCACAGATGCTGGTGCATGCGGATTCGGTTCCTTTGGTGCTACCATTAATGGTGGCGATGTATCAGCTGCATCCAATCTTTACCGTAATGGTGTTGGCTGTGGCTCCTGTTACCAGGTAAGGTGTACAAACAATACCTATTGCTCAGACAATGGTGTCACTGTAGTTATAACTGACCAAGGCTCAGGTGATGGCACCAACTTCATTCTGAGTCAACGAGCCTTTGGTGGGATGGCTCAGACCAGTGACACAGCTCCTTATCTATTAGCTCTTGGCATAGTTGATATTGAATACAGGCGTGTTTCATGCAGCTACCCAAACAAAAACATAACAATTAAGATATACGAGAGCAGCAGTAATCCTAATTACTTGGCTTTTGTCATATGGTTTCAACAAGGAATGAGAGACATAACTGCTGTGCAGCTCTGTGAGACGCAGAACTTTGTCTGTAAGTTACTGGATCGGACTCATGGAGTAGTCTGGACTACTACCTCTCCACCAAGTGGACCTTTGTCGTTACGGATGCTGTTTAGTGCTGAAGATGGAGAACAAACATGGGTTGTCCCCAGTAGTAACATACCAGAAGACTGGAAAGCAGGGGAGACATATGACTCAGGAGTACAAGTGGACAAATAG 765 0.4484 MAVSLLGPLVITTLLCMQTLADASCTDCFVQSRAEYYPNSEVNGTDAGACGFGSFGATINGGDVSAASNLYRNGVGCGSCYQVRCTNNTYCSDNGVTVVITDQGSGDGTNFILSQRAFGGMAQTSDTAPYLLALGIVDIEYRRVSCSYPNKNITIKIYESSSNPNYLAFVIWFQQGMRDITAVQLCETQNFVCKLLDRTHGVVWTTTSPPSGPLSLRMLFSAEDGEQTWVVPSSNIPEDWKAGETYDSGVQVDK 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g01257 254 Pfam Lytic transglycolase 67 141 IPR009009 -
Aip01g01257 254 PANTHER EXPANSIN-B3 9 253 - -
Aip01g01257 254 Gene3D - 16 147 IPR036908 -
Aip01g01257 254 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 47 151 IPR007112 -
Aip01g01257 254 Gene3D - 148 252 IPR036749 -
Aip01g01257 254 PANTHER POLLEN ALLERGEN ORY S 1, PUTATIVE-RELATED 9 253 - -
Aip01g01257 254 SUPERFAMILY Barwin-like endoglucanases 17 150 IPR036908 -
Aip01g01257 254 Pfam Expansin C-terminal domain 153 231 IPR007117 -
Aip01g01257 254 SUPERFAMILY PHL pollen allergen 151 248 IPR036749 -
Aip01g01257 254 PRINTS Expansin/Lol pI family signature 46 64 IPR007118 GO:0005576
Aip01g01257 254 PRINTS Expansin/Lol pI family signature 134 150 IPR007118 GO:0005576
Aip01g01257 254 PRINTS Expansin/Lol pI family signature 234 248 IPR007118 GO:0005576
Aip01g01257 254 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 165 248 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g01257 Aip-Chr1 35003848 35005851 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g01257 9 250 Expansin Gene Family AT4G17030 42.387 5.43e-62 193
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g01257 - - gmx:100794009 415.616
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g00468 05 5328118 5330311 Aip01g01257 01 35003848 35005851 PCT