Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g01248 ATGGTTTGCACTGTCAATGATTTACAACAATGGAAGGATTTCCCAAAGGGACTCAAGGTTCTTCTCCTTGAAGGAGACGCCGCTTCCGCGGCCGAGATAAAACCAAAGCTTGAAGCCATGGACTATAATGTTTCTGCTTTCTGCGACGAGAATGAAGCCTTATCAGCGATCTCAAGTAGATCCGAAAGCTTCCACATTGCCATAGTGGAGGTGAATATAAACAGCGGCCAAGGAGGTTTCAAATTTCTTGAGAATGCCAAGGATTTGCCAACCATTATGACTTCAAACGATCATTGCCTGAGCACCATGATGAAATGCATAGCGCTCGGTGCAGTTGAGTTCCTTCACAAACCTCTCTCCGAGGAGAAGCTTCGAAATATATGGCAGCATGTGGTTCACAAGGCATTCAATGCTAGTGCAAGTGTTATGTCCGAATCGCTAAAACCGGTCAAAGAATCTGTAGTATCCATGTTGCAGCTCCAAACAGACAATGAACAACAAGAAAGTACATATACTGATGATGATCCTGATCCTGGAAGCGATAAGTATCCGGCTCCATCGACCCCCCAATTGAATCAGGGATCGAGATTGATGGACGATGGCGATTGTCAAGAGCAGACTAATTGCTCAACAGAAAAGGAGAGTGGGGAACATGATGGAGAAGGAGAATCGAAATCCGTCGAAACTACATGTGGAAATTTGAATTTTGAAAGTAATAATACTAATGAACCAATGAACACTGAAAAGACTTTGGTCAAGAATTTAAGGGAAGATTCTAGAGATGGGAACCATGATAGTTCTGTTTATAAGCATACAAATGATAAGGTTCTTAGCAGCGATGATGGTAATACAAAGTCTTCAAATAAAGTGGATTCATGCACGTTAAAAGCTCATCGGAAGAAGATGAAAGTAGACTGGACACCCGAGCTGCACAAAAAATTTGTGAAAGCGGTGGAACAACTAGGCCTTGACCAGGCCATTCCATCTCGAATATTGGATCTAATGAAAGTGGAGGGATTGACAAGGCATAATGTTGCAAGCCATCTTCAGAAATATAGAATGCATAAGAGACAAATATTGCCCAAGGAAGAAGGTAGGAAATGGCTGAATCAAAGGGATCAAATGCAAAGGAGCTATTGTCTTCAACAACGACCAATAATGGCGTTTCCACCACCGAATCATTCCAATCACACCCTTTCGCCAGCTCCTATATATCCCATGTGGAGGCAATCCGGCGGTCAAGCAGCAGCTATGCCGGTCTGGGGCCCTCCCGGTTATCCTCTGTGGCATCCTACAGAAAGCTGGCACTGGAAGCCGCTTCCCGGGTTGCAGATGCATGCGGATGCATGGGGCTGCCCGGTTCTGCCACCTCCTCAGGCTCCTCTTCCTTGCTTTTCCTACCCTTTGAATGTCCCCGGCATGCACCATACTAGTGCTGTGGATTACAAGTCTATCATGCCACAGAGTTCCCTTGATCTTCATCTGGCCGAGGAGGTTGTTGACAAGGTAGTGAAAGAAGCAATAAGCAAGCCATGGCTACCATTACCCTTAGGCCTCAAGCCTCCTTCCACAGATAGTGTGCTGGCCGAGCTTTCGCGAAAAGGCATATCGACCTTCCCTCCATGTAGCAAGGGGTCCTAA 1641 0.4576 MVCTVNDLQQWKDFPKGLKVLLLEGDAASAAEIKPKLEAMDYNVSAFCDENEALSAISSRSESFHIAIVEVNINSGQGGFKFLENAKDLPTIMTSNDHCLSTMMKCIALGAVEFLHKPLSEEKLRNIWQHVVHKAFNASASVMSESLKPVKESVVSMLQLQTDNEQQESTYTDDDPDPGSDKYPAPSTPQLNQGSRLMDDGDCQEQTNCSTEKESGEHDGEGESKSVETTCGNLNFESNNTNEPMNTEKTLVKNLREDSRDGNHDSSVYKHTNDKVLSSDDGNTKSSNKVDSCTLKAHRKKMKVDWTPELHKKFVKAVEQLGLDQAIPSRILDLMKVEGLTRHNVASHLQKYRMHKRQILPKEEGRKWLNQRDQMQRSYCLQQRPIMAFPPPNHSNHTLSPAPIYPMWRQSGGQAAAMPVWGPPGYPLWHPTESWHWKPLPGLQMHADAWGCPVLPPPQAPLPCFSYPLNVPGMHHTSAVDYKSIMPQSSLDLHLAEEVVDKVVKEAISKPWLPLPLGLKPPSTDSVLAELSRKGISTFPPCSKGS 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g01248 546 Gene3D - 18 145 - -
Aip01g01248 546 Pfam Myb-like DNA-binding domain 304 353 IPR001005 -
Aip01g01248 546 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 301 356 IPR006447 GO:0003677
Aip01g01248 546 SUPERFAMILY Homeodomain-like 299 358 IPR009057 -
Aip01g01248 546 Gene3D - 297 359 - -
Aip01g01248 546 SMART REC_2 18 128 IPR001789 GO:0000160
Aip01g01248 546 MobiDBLite consensus disorder prediction 161 289 - -
Aip01g01248 546 MobiDBLite consensus disorder prediction 211 225 - -
Aip01g01248 546 MobiDBLite consensus disorder prediction 250 278 - -
Aip01g01248 546 MobiDBLite consensus disorder prediction 185 210 - -
Aip01g01248 546 SUPERFAMILY CheY-like 16 135 IPR011006 -
Aip01g01248 546 MobiDBLite consensus disorder prediction 226 249 - -
Aip01g01248 546 ProSiteProfiles Response regulatory domain profile. 19 132 IPR001789 GO:0000160
Aip01g01248 546 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 544 IPR044825 GO:0003700|GO:0045893
Aip01g01248 546 Pfam Response regulator receiver domain 20 127 IPR001789 GO:0000160
Aip01g01248 546 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 298 357 IPR017930 -
Aip01g01248 546 PANTHER TWO-COMPONENT RESPONSE REGULATOR-LIKE APRR2 1 544 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g01248 Aip-Chr1 34428024 34434555 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g01248 1 543 Response Regulator Gene Family AT4G18020 50.783 8.19e-149 436
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Aip01g01248 Response_reg 2.3e-08 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g01248 - - ccaj:109791214 733.021
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g00477 05 5384435 5388648 Aip01g01248 01 34428024 34434555 PCT