Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g01227 ATGGGAGGGGCATCACTGCCACCTGGATTTCGTTTCCACCCAACAGATGAAGAATTATTGGGATATTACCTAAAAAGAAAAGTGGAAGGGCTTGAAATTGAGCTTGAGGTTATTCCTGTGATTGATTTGTGCAAGTTTGATCCTTGGGAATTGCCTGAGAAATCATTGTTGGCAAATAGAGACATGGAATGGTTCTTCTTTTGTCCAAGGGACCGCAAGTACCCAAATGGATCAAGAACTAACAGAGCCACCAAAGCTGGTTATTGGAAAGCCACTGGAAAAGACAAGAAAGTTGTGTGCCAATTTGATACTCCTTCCACTGTCACAGGATATAGAAAAACCCTTGTCTTCTACCGTGGCAGAGCCCCTTTAGGTGACAGAACTGATTGGCTCATGCATGAGTATCGCCTCGCCGATGATCTCGGCCTATCATCTACATGTTTTCAGGGTGGTTATGCCTTGTGTCGGGTTATTAAGAAGAATGAGAAGGTGAACAATGAGAATGACGCGTCAATGAGATTCTCCAATGAGCCCTTCGCCATTTCTGCTGATGCTTCATCCTCTCAACCAAGTTATTTGAACAATGAGAGTGTTTACTCAAGCCCCAATGCTTCTCCACACAATGTGGACTCTAACCAAGCTTCTATAAACACCAGTTCTTCATCAGAGTTTTGGGTGTCCCCTGATCTGATTCTTGATTCTTCAAAGGACTACCCGCAACTACAAAATACTTTTACAAGGTGTGACATACCAAGTAGTACAATGACACCATGGCTCTCATTGGATCAACCTGAAATTTCATCTAGTTCATCATACTCAAATTTTAATGGGTAA 834 0.4257 MGGASLPPGFRFHPTDEELLGYYLKRKVEGLEIELEVIPVIDLCKFDPWELPEKSLLANRDMEWFFFCPRDRKYPNGSRTNRATKAGYWKATGKDKKVVCQFDTPSTVTGYRKTLVFYRGRAPLGDRTDWLMHEYRLADDLGLSSTCFQGGYALCRVIKKNEKVNNENDASMRFSNEPFAISADASSSQPSYLNNESVYSSPNASPHNVDSNQASINTSSSSEFWVSPDLILDSSKDYPQLQNTFTRCDIPSSTMTPWLSLDQPEISSSSSYSNFNG 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g01227 277 MobiDBLite consensus disorder prediction 192 215 - -
Aip01g01227 277 Gene3D NAC domain 15 166 IPR036093 GO:0003677|GO:0006355
Aip01g01227 277 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 1 277 - -
Aip01g01227 277 Pfam No apical meristem (NAM) protein 7 137 IPR003441 GO:0003677|GO:0006355
Aip01g01227 277 SUPERFAMILY NAC domain 4 160 IPR036093 GO:0003677|GO:0006355
Aip01g01227 277 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 1 277 - -
Aip01g01227 277 ProSiteProfiles NAC domain profile. 6 160 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g01227 Aip-Chr1 33309070 33310778 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g01227 1 248 NAC Transcription Factor Family AT4G17980 59.600 3.71e-101 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Aip01g01227 NAM 2e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g01227 - - aip:107605232 541.191