Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g01223 ATGAATGAGAAATACCAGGAGGACGATGACTTTAACCAACAAGAAGAGCTAGTAAGTGACCAATATATGATGGATGAACAGAATGAATTCGAACAAGATTTCAGAGATGAATTTACTGAGGGAGCGTATTTTTCTGAATCTAATCAGTCAGAAGATATCCTTGAAGCTGCTTATGCGGTTGACTCCGTGCAAGACATTACAACTTTGAATTTTAGTAAAAATTTTACGGATGAAATTAGCAAATATCACTTTTCTACTTTGCAGCTTGCATTTGATTTTTATCTGAAGTACTCAAAGTCTAAGGGCTTTAGTGCAAGGAAGAGCAAGACCTTCAAGAATAGTGTTGGCGAGATTTACAAACAAAAGTTTGTATGTCATAGGCAAGGATTCAGGGAGGAGAAATATTACACGATGGAAAAAAGGAAGAAGGAGCCTAGATTGGAAACAAGAACTAGATGTGAAGCTCGAATGGATGTTAAATTTGTACCAGAAACTGGAAGGTGGCATATCTTTTATTTCTCTGACGAACACAACCATGATCTATTGGATACACAATTCAGTGCTATGTTGCCTGCCCACAGAAAAATGTTAGAGGCAGATATTATGTAA 609 0.3678 MNEKYQEDDDFNQQEELVSDQYMMDEQNEFEQDFRDEFTEGAYFSESNQSEDILEAAYAVDSVQDITTLNFSKNFTDEISKYHFSTLQLAFDFYLKYSKSKGFSARKSKTFKNSVGEIYKQKFVCHRQGFREEKYYTMEKRKKEPRLETRTRCEARMDVKFVPETGRWHIFYFSDEHNHDLLDTQFSAMLPAHRKMLEADIM 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g01223 202 Pfam FAR1 DNA-binding domain 92 182 IPR004330 -
Aip01g01223 202 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN 13 195 - -
Aip01g01223 202 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 13 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g01223 Aip-Chr1 33158683 33159291 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Aip01g01223 FAR1 5.1e-21 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g01223 - - ahf:112728364 382.489