Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Aip01g01219 | ATGGGTTGCACTGTGAGGGAAAAGCACATCAGAGCGAATCGGAGGCCCCGATCATCATCGAAACCCGATTCTGATTCGTGCGACAGAGACCCGATTTCCAAATCTATAGCTGAGTCTGGCCTCAAGCCCTTCAGGTACCATCACCATGTGCCTCCCAACAACAACAACAACGAACCTTCTTCTACCCAGAACACGAACCCTAACTCCGATGAAACGGGTTGGGGTTACTGCACGGAGGAACAGTTGGAGGAGATCCTCTTGAAGAACCTCGAATTCATTTACAACGAAGCGGTTTCCAAGCTCGTCGCTTTGGGTTACGATGAGGACGTTGCGGTCAAAGCTATTTTGAAAAACGGCCATTGCTACGGCGGAATGGATGTTCTCACCAACATACTACATAATTCGTTAGCCTACTTGAATAATAATAATAACAATAATAATAATAATAGTGCTGGAAATGGTGGGAATTTGGACGAGAGTGAGGCTGCTTTCTCTGATTTGAGGCACTTGGAGGAGTATTCTCTTGCTGGTATGGTGTGTTTGTTGCAACAGGTGAGGCCTCATTTGAGCAAAGGTGATGCAATGTGGTGTTTGCTAATGAGTGATCTTCATGTTGGTAGGGCCAGCACTATGGAGATTCCGGTCCCGGGAAGTGGGTACCCGAGTACTGCCACTGTGGCTGCCACGGTTGAAGGTGGTGGTAATTCGGTGGTAGTTGGTGATGGTGGTGGCAATTCGGCGGTTGGTGGTGGTGGTGTTATGGCTCCTGCATTGTGTAGGTTTCATGGTGGTTGGGGATTTGGGAATGGGGCAGGCTCAGGGTTTCAGGCGAATGGGTTGTTCTCTTATGGTGCTGCTGAGATGAATTTGCATCTGCAAAGGGATATTGAGTTCCCTAAGAGGTTTAATCTTTCGCCTTCCATGAAATCATTGTTGAAGAGGAATGTGGCTGCGTTTGCTGCTGGTTTTAGGGCGAATTCGAAGCAATTGCAGACTCAGGCTCAGGTGAAGGCCTTTTCTGGTAGTGCTTCTGTGTCGAAGTTGGATTCTCCGGCTGTGAATGGGGCTGAAGCACTGGTTGAGCAGCCTGGACAGGTGGGAGAATCTCAGAATGTTGATAGCCAAGATGCTGTGAATTCAGTGCTGAGTAAGTTTCGTGATCTTAATCTTGATGAGAATTTGGAGCTTGTGGCAGAGGATCAGAAGGATGAGGTGATAGTCACTTTGTTTCATCAGATCAAGGATCTTGAGAAACAGGTCAAGGAGCGAAAAGATTGGGCTCATCAGAAGGCAATGCAAGCTGCGAGAAAGCTAAGCAGTGATCTTACTGAGCTCAAGATGTTGAGGATGGAAAGAGAGGAGACTCAGAGATTGAAGAAAGGGAAACAGGCACTCGAGGACACCACCATGAAGAGGCTCTCAGAGATGGAAAATGCTTTGAGAAAGGCTAGTGGTCAAGTGGACCGTGCGAATGCAGCCGTGAGGAGACTAGAGACAGAGAATGCAGAAATTAAAGCAGAGATGGAGGCTTCCAAGTTAAGTGCATCAGAGTCCGTGACAGCTTGCTTAGAGGTTGCAAAAAGGGAGAAAAAATGCTTAAAGAAGCTTCTTGCTTGGGAGAAACAGAAAGCTAAGCTGCAGCAGGAGATTGCTGATGAAAAAGCAAAGATATCGGAGACACAAGAAGTCTTGGCTCAGATTAGACAGCGCCAAAAAGACGCGGAGGTTAAGTGGAAAGAAGAGGTGAAGGCTAAAGAGGAAGCTTCAGCACTAATCGAAGAGGAGCGCCACTCTAAGGAAGCAGCTGAATCTAATAATAAGAGGAAACTCGAGGCTCTACGTCTGAAGATTGAGATAGATTTCCAGCGCCACAAGGACGATCTACTGCGACTTGAGCAAGAGCTCTCACGGCTTAAAGCGTCTGCACAGTCTGCCGAGCTGCATCATCAGTCAAATGCTGCTTCACCTGTTGGTGGCAACTCTGAGGGCGCAATGCCCCAGAGAGATACAATTGCCAAGCTACTTCAAGAACTAAATAATCTAGAGGATTATTCGGAGAAGGAAGTCAATGGCAACAGAGAATGCATTATATGCATGAAAGATGAAGTTTCCATTGTTTTCTTGCCGTGTGCACACCAAGTTATGTGTGCCGGTTGCGGTGATGAGTATGGAAGAAAGGGAAAAGCTGCTTGTCCTTGCTGCAGGGTTCCGATCCAACAACGAATTCGGGTGTTTGGTGCAAGCTCATAG | 2250 | 0.4738 | MGCTVREKHIRANRRPRSSSKPDSDSCDRDPISKSIAESGLKPFRYHHHVPPNNNNNEPSSTQNTNPNSDETGWGYCTEEQLEEILLKNLEFIYNEAVSKLVALGYDEDVAVKAILKNGHCYGGMDVLTNILHNSLAYLNNNNNNNNNNSAGNGGNLDESEAAFSDLRHLEEYSLAGMVCLLQQVRPHLSKGDAMWCLLMSDLHVGRASTMEIPVPGSGYPSTATVAATVEGGGNSVVVGDGGGNSAVGGGGVMAPALCRFHGGWGFGNGAGSGFQANGLFSYGAAEMNLHLQRDIEFPKRFNLSPSMKSLLKRNVAAFAAGFRANSKQLQTQAQVKAFSGSASVSKLDSPAVNGAEALVEQPGQVGESQNVDSQDAVNSVLSKFRDLNLDENLELVAEDQKDEVIVTLFHQIKDLEKQVKERKDWAHQKAMQAARKLSSDLTELKMLRMEREETQRLKKGKQALEDTTMKRLSEMENALRKASGQVDRANAAVRRLETENAEIKAEMEASKLSASESVTACLEVAKREKKCLKKLLAWEKQKAKLQQEIADEKAKISETQEVLAQIRQRQKDAEVKWKEEVKAKEEASALIEEERHSKEAAESNNKRKLEALRLKIEIDFQRHKDDLLRLEQELSRLKASAQSAELHHQSNAASPVGGNSEGAMPQRDTIAKLLQELNNLEDYSEKEVNGNRECIICMKDEVSIVFLPCAHQVMCAGCGDEYGRKGKAACPCCRVPIQQRIRVFGASS | 749 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Aip01g01219 | 749 | Coils | Coil | 529 | 577 | - | - | |
| Aip01g01219 | 749 | MobiDBLite | consensus disorder prediction | 16 | 32 | - | - | |
| Aip01g01219 | 749 | PANTHER | OS05G0141500 PROTEIN | 1 | 748 | IPR046934 | - | |
| Aip01g01219 | 749 | MobiDBLite | consensus disorder prediction | 642 | 665 | - | - | |
| Aip01g01219 | 749 | MobiDBLite | consensus disorder prediction | 1 | 74 | - | - | |
| Aip01g01219 | 749 | ProSiteProfiles | Zinc finger RING-type profile. | 695 | 735 | IPR001841 | - | |
| Aip01g01219 | 749 | PANTHER | RING/U-BOX SUPERFAMILY PROTEIN | 1 | 748 | - | - | |
| Aip01g01219 | 749 | SUPERFAMILY | RING/U-box | 694 | 741 | - | - | |
| Aip01g01219 | 749 | Coils | Coil | 621 | 648 | - | - | |
| Aip01g01219 | 749 | Coils | Coil | 585 | 612 | - | - | |
| Aip01g01219 | 749 | Pfam | Family of unknown function (DUF6592) | 89 | 209 | IPR046527 | - | |
| Aip01g01219 | 749 | MobiDBLite | consensus disorder prediction | 50 | 74 | - | - | |
| Aip01g01219 | 749 | Pfam | Zinc finger, C3HC4 type (RING finger) | 692 | 740 | - | - | |
| Aip01g01219 | 749 | Coils | Coil | 473 | 514 | - | - | |
| Aip01g01219 | 749 | MobiDBLite | consensus disorder prediction | 642 | 658 | - | - | |
| Aip01g01219 | 749 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 679 | 746 | IPR013083 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Aip01g01219 | Aip-Chr1 | 33090155 | 33096632 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Aip01g01219 | 675 | 745 | C3H Transcription Factor Family | AT1G73950 | 33.333 | 3.32e-07 | 51.6 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Aip01g01219 | - | - | adu:107483267 | 1342.79 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Aip05g00493 | 05 | 5602287 | 5605344 | Aip01g01219 | 01 | 33090155 | 33096632 | PCT |