Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g01215 ATGCCAGTTCCACTTGCTCCTTATCCAACACCACCGGCTCCACATACTCCTCCATCCGCAAATGGTCAACAGAGCCAACTTGTGTGTTCTGGCTGTAGAAACCTTTTGCTCTATCCGGTTGGAGCCTCCTCTGTTTGCTGTGCTGTTTGCAATGCAGTCACCGCCGTGCCGCCTCCCGGAACGGAAATGGCCCAGTTAATCTGTGGAGGCTGCCATACATTACTAATGTACATCCGTGGCGCAACAAGTGTCCAATGCTCATGCTGTCACACTGTGAATCTAGCCATGGAAGGCATCAACAAGCATCACAGAGCAGAAGTTCAGCAACTAAATCAAACTATATATAGAGCAAAGTTAAATGATACAGAGACTCTACTATCTTGGTTTTGCTAG 393 0.4784 MPVPLAPYPTPPAPHTPPSANGQQSQLVCSGCRNLLLYPVGASSVCCAVCNAVTAVPPPGTEMAQLICGGCHTLLMYIRGATSVQCSCCHTVNLAMEGINKHHRAEVQQLNQTIYRAKLNDTETLLSWFC 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g01215 130 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 26 56 IPR005735 -
Aip01g01215 130 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 65 94 IPR005735 -
Aip01g01215 130 PANTHER PROTEIN LSD1 1 101 IPR040319 -
Aip01g01215 130 PANTHER PROTEIN LOL1 1 101 - -
Aip01g01215 130 MobiDBLite consensus disorder prediction 1 20 - -
Aip01g01215 130 MobiDBLite consensus disorder prediction 1 18 - -
Aip01g01215 130 Pfam LSD1 zinc finger 29 53 IPR005735 -
Aip01g01215 130 Pfam LSD1 zinc finger 68 92 IPR005735 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g01215 Aip-Chr1 32374069 32376595 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Aip01g01215 zf-LSD1 8.8e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g01215 - - rcu:8284618 159.458
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g00494 05 5631499 5633126 Aip01g01215 01 32374069 32376595 PCT