Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g01205 ATGATTCTTGGTCTTAGAGTTGTTGCAGCTGTTCTTATTGGAACTGATTCACAAGTGAAGGTGTTTTTCTCCTTTGAGAAGAAAGCTAAATTCACTGATGTTAAGGCTTTGGTATTCTTGGTAGTTGCTAATGGTTTGGCTGCTGGATACTCTTTTATTCAAGGACTCTGTTGTGTTGTGTGTTTGTGTCTAGAGAAAATTAGTTATTTGGGTGTAGGTGTTAGTCTTGGAACAGTTCCAGTATACCATAGCACAAACCTGAAATTGTTGGATAAGAGGATCAAGATAGCTGATTTGGTGTTAAAGTTTATGATTCTTGGTCTTGGAGTTGTTGCAGCTGTTCTTATTAGAACTGATTCACAAGTGAAGGTGTTTTTCTCCTTTGAGAAGAAAGCTAAATTCACTGATGTTAAGGCTTTGATATTCTTGGTTGTTGCTAATGGTTTGGCTGCTGGATACTCTTTTATTCAAGGATTCCGTTGTGTTGTGAGTTTGGTTAGGGGAAGTGAAAATAAGGGTATGAAAATCACGTTCTCCTCGACGGCGTCTTCATTTTACAAAACACCCTATCCTTCATCGACGCTGCATCTCACCGATTCGCTCCTAATCCTTCATCATCCGCGCCTTTCGCTCCTTCACCGCCGTTCCCGAAGCTCCATCACACCCCTTCCCCAATCTCTCTCTTTCAGTTTCGATGCCGATGAATTTCGCTACCTTCTCCATGCCGTTTTCTGTCGCTGCTCGCTAAAGCTTGTCAGTGTCGTCGCCGCCGCTTCTACTTCTTCTTCTCGTCGCCGTTGGTTTAGTGATTTGGTTGTAGCTTCTCCTGTGGAGGATTACTTTTTATACATTGATGATCTGAAAAATCCTGATAAGGAAGAAGCTGAGAAAATTACACAACCAAATTTAGATGCTCTTGGTGAAGACTATTCTGTTTGTTGCCAAGGAACTGCTTTTTTTCCTTTGCAAAGCTGCATGAACCATTCCTGTAGTCCTAATGCCAAAGCCTTCAAGAGAGACGAGGATAGAGATGGCCAAGCAACCATAATCGCAGTAAGGCCGATTCGAAAAGGAGAAGAGATAGCAACAGGTTTCAGCATGTATGTTGACTGGAGAATGGCTTTGGTAGCTTGGGCTGTGATGCCTTGCCACTTCATAGACAGTCTCATTCAAGCAAAGTCTGCCAAAGGCTTTTCAGGTGACTATGCTGCTTCCCATTTTGAGCTTGTTGCTCTTGCATCTGAGTCTTCCGCCAATATAAGGACTATAGCGTCATTTTTCCATGAAGAACATGGTGAGGAAACCCAAGATCTGCATCTTGTGGAGGAAAGAGGACTTCACTTTCATGAAAACTTTGATATTGATGAAGAAACTAGATTCTCTTCAGTCGCTAGGGGTAAAGCGTTGAGTGTTATATTCAACCTTGCATCTCACCACTCTCCTACCATTAGTAACAAGGATACCCTCATCTTCGGTGCAAACTCTACATGCCAGGCTTACACAAAGACTCCGAATTTATCCTCATGGAACTGCATGCAGTGTTTGCAAGCAGAATGTGCATTTTTTAGCAGCAGTAGTGGTGAAGTTGACGTCTATACATTGTCAAGAAAGTGGAAGGAGTTGGTTGATAAGGTCCGAGCCAAGCAGCTCCAACCTCATGAGTACAGCACAGGTACAATAGTCAAATATTTATAA 1695 0.4242 MILGLRVVAAVLIGTDSQVKVFFSFEKKAKFTDVKALVFLVVANGLAAGYSFIQGLCCVVCLCLEKISYLGVGVSLGTVPVYHSTNLKLLDKRIKIADLVLKFMILGLGVVAAVLIRTDSQVKVFFSFEKKAKFTDVKALIFLVVANGLAAGYSFIQGFRCVVSLVRGSENKGMKITFSSTASSFYKTPYPSSTLHLTDSLLILHHPRLSLLHRRSRSSITPLPQSLSFSFDADEFRYLLHAVFCRCSLKLVSVVAAASTSSSRRRWFSDLVVASPVEDYFLYIDDLKNPDKEEAEKITQPNLDALGEDYSVCCQGTAFFPLQSCMNHSCSPNAKAFKRDEDRDGQATIIAVRPIRKGEEIATGFSMYVDWRMALVAWAVMPCHFIDSLIQAKSAKGFSGDYAASHFELVALASESSANIRTIASFFHEEHGEETQDLHLVEERGLHFHENFDIDEETRFSSVARGKALSVIFNLASHHSPTISNKDTLIFGANSTCQAYTKTPNLSSWNCMQCLQAECAFFSSSSGEVDVYTLSRKWKELVDKVRAKQLQPHEYSTGTIVKYL 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g01205 564 SUPERFAMILY SET domain 306 383 IPR046341 -
Aip01g01205 564 Gene3D SET domain 274 362 IPR046341 -
Aip01g01205 564 SUPERFAMILY ABC transporter transmembrane region 363 435 IPR036640 GO:0005524|GO:0016021
Aip01g01205 564 CDD SET_SMYD 314 361 - -
Aip01g01205 564 PANTHER CASP-LIKE PROTEIN 2B2 1 62 - -
Aip01g01205 564 Gene3D ABC transporter type 1, transmembrane domain 363 440 IPR036640 GO:0005524|GO:0016021
Aip01g01205 564 PANTHER CASP-LIKE PROTEIN 2B2 68 169 - -
Aip01g01205 564 ProSiteProfiles SET domain profile. 92 366 IPR001214 GO:0005515
Aip01g01205 564 PANTHER NITRATE, FORMATE, IRON DEHYDROGENASE 68 169 - -
Aip01g01205 564 PANTHER NITRATE, FORMATE, IRON DEHYDROGENASE 1 62 - -
Aip01g01205 564 TIGRFAM A_tha_TIGR01569: plant integral membrane protein TIGR01569 4 66 IPR006459 -
Aip01g01205 564 TIGRFAM A_tha_TIGR01569: plant integral membrane protein TIGR01569 99 170 IPR006459 -
Aip01g01205 564 Pfam SET domain 298 361 IPR001214 GO:0005515
Aip01g01205 564 Pfam Casparian strip membrane protein domain 3 66 IPR006702 -
Aip01g01205 564 Pfam Casparian strip membrane protein domain 92 173 IPR006702 -
Aip01g01205 564 Pfam ABC transporter transmembrane region 363 431 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g01205 Aip-Chr1 30830659 30838336 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g01205 494 559 Acyl Lipid Metabolism Gene Families AT1G34430 46.377 8.78e-12 65.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Aip01g01205 ABC_membrane 3.1e-06 CL0241
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g01205 - - aip:107628408 343.199