Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g01204 ATGGAATCGTCATCACCTAGCTGGTTACATGATCTGGAAATGGAAGATGATTACAACAATTTCTTTCCGAAAGAGTACAGCATGAACAACTCGATTGATGATTACGATGAAGATTTATTTTTCGCACATGACATAGGGAATTCTATAATGTTCGAGTCACCAAGCAATAATAATAATTACTCTTCCGTTGATGAAACTAGTTTTGATGATGAGAGGCCTTCTAAGTTTCTCAAAACAAGTACCAATAGTGATAATAATTCTTATTATTCATCATTATCACCAAATTTTTCTTCCCTCTCATCATCATCATCATCATCATCATCAATAACATCATTTCAGCCACAAATTCTGTGCTTTGACAACTCAAACTCCTCTCTCAATAATAATGATAATACCACCCAGCTTTATGATTTAGATTACACCACCTTGAACACAAAGACAAAACTAAAAGAGGTGGTGAATGGGTCATCAAAAAATCAAAACCTGGTCACAAAATCCTCATCAAATGGTTCTAAGAGGTCACCATCTAACGCTCAGGATCATATCATAGCTGAGAGGAAGAGAAGAGAGAAGATCAGCCAGAGTTTCATTGCTCTTGCAGCTCTTGTTCCTGGCCTCAAGAAGATAGATAAAGTTACTGTGTTAGAGAATGCAATCAAGTACGTGAAGGATCTCAAAACTCGTCTTACAACACTAGAACAAGAAAACAATGAGAAAATAAAGGAAATAGCAGAAGAGCCTTCTGTGATTGTTCTTAACAAAAGGTCGCCACATGATAATGAGAGTGACGATGAGAGCGTTATTGTTGATGATGCTTCTAATCATGATTCTTCTTCACTTCTCCATCAAGTGGAAGCAAGAGTATCAGGGCAACAGGTTTTGATTCGGATTCATTGTCAAAAGCATAAGGGTATTTTGGTTAAATTACTTTCTGAGATTCAAGGACATAACCTACTTGTTTTGAATAGCAGTGCGTTGCCTTTTGGAGATTCGATTCTTGATATAACTGTCATTACCCGGATGGGCGAAGGGTACAATTTGACCGTTAAGGAACTTGTCAAGAGCATACGCGTGGAAACATTGAAGTTCATCTTGTCATAA 1101 0.3715 MESSSPSWLHDLEMEDDYNNFFPKEYSMNNSIDDYDEDLFFAHDIGNSIMFESPSNNNNYSSVDETSFDDERPSKFLKTSTNSDNNSYYSSLSPNFSSLSSSSSSSSSITSFQPQILCFDNSNSSLNNNDNTTQLYDLDYTTLNTKTKLKEVVNGSSKNQNLVTKSSSNGSKRSPSNAQDHIIAERKRREKISQSFIALAALVPGLKKIDKVTVLENAIKYVKDLKTRLTTLEQENNEKIKEIAEEPSVIVLNKRSPHDNESDDESVIVDDASNHDSSSLLHQVEARVSGQQVLIRIHCQKHKGILVKLLSEIQGHNLLVLNSSALPFGDSILDITVITRMGEGYNLTVKELVKSIRVETLKFILS 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g01204 366 PANTHER BASIC HELIX LOOP HELIX (BHLH) DNA-BINDING FAMILY PROTEIN 1 364 - -
Aip01g01204 366 SMART finulus 182 231 IPR011598 GO:0046983
Aip01g01204 366 MobiDBLite consensus disorder prediction 151 180 - -
Aip01g01204 366 Coils Coil 215 242 - -
Aip01g01204 366 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 180 246 IPR036638 GO:0046983
Aip01g01204 366 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 176 225 IPR011598 GO:0046983
Aip01g01204 366 MobiDBLite consensus disorder prediction 151 178 - -
Aip01g01204 366 PANTHER BHLH TRANSCRIPTION FACTOR 1 364 - -
Aip01g01204 366 MobiDBLite consensus disorder prediction 61 83 - -
Aip01g01204 366 Pfam Helix-loop-helix DNA-binding domain 180 225 IPR011598 GO:0046983
Aip01g01204 366 Gene3D - 168 242 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g01204 Aip-Chr1 30555651 30566252 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g01204 5 364 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 33.155 3.58e-44 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aip01g01204 HLH 6.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g01204 - - ahf:112720570 563.918