Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g01202 ATGGAGAAATCGAACACACCAATGGACACATCAGCAGCCAGCTGGTTATCTGAATTGGAAATTGATGAGGATTACAATTTCTTCCCGGACCTTGATTTTGATCTAGTCGATGAGGAAGATTTTCTTTCACATGAGTTAATAGCAAGTGAGGATCTTCAAGGGAAGTCTGCACTACAGGACCAATCTTTATCTGCAGAGTGCAATTCCAAAGAGCTAAGTAATTGTTGCACCGATGAAATGATGAGTTTTGAAGAGATGCTAAGAAACATCAACGATGAAACCTTTTCACCCAAACTTTCTTCATCATCTTCTCAGATTCTGTCCTTTGATAACTCAGACTCATTATCATCATCTCCACCCAATAATACGACACAGTTTTATGAGTTGAAAAATAGCTTAAACCAAAGGCAAGACTCAGTTGAAACTCCAAATAATAATAATAATAAAAAGAGTGATTCCTTGAATACACAAAATGTGGAAGCAAAGAGTACCTCAACACTTGGTAAGAGGTCACCATCTCATGCTCACGATCATATCATAGCTGAGAGAAAGAGAAGAGAGAAGATCAGTCAGAGTTTCATTGCTCTTGCAGCCCTTGTTCCTGGCCTCAAGAAGATGGACAAGGCTTCTGTGTTGGGGGACTCTATCAAGTATGTGAAAGAGCTGAAAGAGCGTTTGGCAGTGCTCGAAGAAGAATCCAAGAAAACAAAGGCTCTGCCTACGGTGGTTCTGAACAAAGCAGAACAACTCCATGCTCATGGTGCTGCTGTGTTCTCCTCATTATGCGAAGAAGAGACCATTGATGGTCTTCCACAGGTTGAAGCAAGAGAGTGGGGGCAACAAGTGTTGCTTCGAATCCACTGCTGGAAGGAAGAGGGCATTTTGGTCAGAATATTGTCTGAGATTCAAAGCCTTCAATTGATGGTTCTTAATAGCAGTGTCTTATCATTTGGAGATTCCATTCTTGACATAACCATCATTGTTCAGGCGGGCGAAGGTTACAACTTGACCCTTAATGAACTTGTCAAGAACCTACGCATGGCTACGTTGAAACTCATGTCATAG 1065 0.4141 MEKSNTPMDTSAASWLSELEIDEDYNFFPDLDFDLVDEEDFLSHELIASEDLQGKSALQDQSLSAECNSKELSNCCTDEMMSFEEMLRNINDETFSPKLSSSSSQILSFDNSDSLSSSPPNNTTQFYELKNSLNQRQDSVETPNNNNNKKSDSLNTQNVEAKSTSTLGKRSPSHAHDHIIAERKRREKISQSFIALAALVPGLKKMDKASVLGDSIKYVKELKERLAVLEEESKKTKALPTVVLNKAEQLHAHGAAVFSSLCEEETIDGLPQVEAREWGQQVLLRIHCWKEEGILVRILSEIQSLQLMVLNSSVLSFGDSILDITIIVQAGEGYNLTLNELVKNLRMATLKLMS 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g01202 354 MobiDBLite consensus disorder prediction 137 177 - -
Aip01g01202 354 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 173 222 IPR011598 GO:0046983
Aip01g01202 354 PANTHER BASIC HELIX LOOP HELIX (BHLH) DNA-BINDING FAMILY PROTEIN 5 354 - -
Aip01g01202 354 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 178 235 IPR036638 GO:0046983
Aip01g01202 354 MobiDBLite consensus disorder prediction 137 170 - -
Aip01g01202 354 PANTHER BHLH TRANSCRIPTION FACTOR 5 354 - -
Aip01g01202 354 Gene3D - 165 238 IPR036638 GO:0046983
Aip01g01202 354 Pfam Helix-loop-helix DNA-binding domain 178 222 IPR011598 GO:0046983
Aip01g01202 354 SMART finulus 179 228 IPR011598 GO:0046983
Aip01g01202 354 Coils Coil 212 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g01202 Aip-Chr1 30142205 30147787 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g01202 148 348 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 45.545 2.40e-50 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aip01g01202 HLH 1.6e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g01202 - - aip:107617512 644.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g00504 05 5851623 5853182 Aip01g01202 01 30142205 30147787 PCT