Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g01198 ATGATGCAAATCTCCACCACCAACAAGTACTTGCCTGAATTTGGAATGGATGAGTCGGTTTTCTTCCATAATCAATACCCAATGATGGATTCATCAACAATCACATCATCTCCAACACCATGGCCGCAGATTAATCTTGATGATATTGACTTCAACCAAATCCAAGAGTCCTTCTCTTCAGCCTCATCCCCAAAGAGCTACACCTCAAACAAGCGCTTCAACTCTTCTTTCTCACCAATTGAAAGACCAACTAAGCAACAAAAAAATGCTTATAGCCATGGGATTAGTACTAATACCACTACTACTACCAGCAATGAATTCATGGTTCCCAAAGCTTCTTCCTCTTCTTCTTCCCAAATCATCTCGTTCGAGCAGCACTCGAACGCTTCTTCGGTTGCTTCCTATAACCACCATCATCAGCAACTCTACAATAATAACCCTTCTTCAGATCAGGGTAACCATGTTTTGAAGCCCAAGACTGAGAGTGTGTGCAGTGAGAATTTGGATTTTGCCAGTGTGGTTTCTCAAGCTGATAAGGCCAATAAAGGTTCCGCGGGGGCGGCCACCACCAGAAACCCAACTCAGGCCCAAGATCACGTCATTGCCGAAAGAAAACGAAGGGAGAAGCTCAGCCAGAGGTTCATTGCACTTTCCGCCATTGTTCCTGGACTCAAGAAGATGGACAAGGCTTCTGTATTGGGAGATGCTATCAAATATCTGAAGCAACTGCAAGAAAAAGTGAAGATTCTAGAAGAGCAAGTTGCTGAAAAAACCGTAGAATCCGCAGTTTTCGTGAAGAGATCCATCCTCTTCGCAGAAGACAATGGATCTTCTTCGGAAGAGAACCCGGAGATAGAAGCAAGAATTTCAGGCAAAGACGTTCTCATTAGAATCCACTGTGACAAACACAGTGGAATAGTGCCAAAAATAATCAACGAGATTGAGAAGCATGATCTCAGTGTTCAAAGTAGTAGCTTCTTGCCCTTTGGGAACAACTCACTTGACATCACCATTGTTGCTCAGATGAAGAAGGAATGCACCTTGACAGCAAAAGATATAATAAAAGGCTTAAATCAGGCTTTGAAGCAGCTGAGTTGA 1098 0.4317 MMQISTTNKYLPEFGMDESVFFHNQYPMMDSSTITSSPTPWPQINLDDIDFNQIQESFSSASSPKSYTSNKRFNSSFSPIERPTKQQKNAYSHGISTNTTTTTSNEFMVPKASSSSSSQIISFEQHSNASSVASYNHHHQQLYNNNPSSDQGNHVLKPKTESVCSENLDFASVVSQADKANKGSAGAATTRNPTQAQDHVIAERKRREKLSQRFIALSAIVPGLKKMDKASVLGDAIKYLKQLQEKVKILEEQVAEKTVESAVFVKRSILFAEDNGSSSEENPEIEARISGKDVLIRIHCDKHSGIVPKIINEIEKHDLSVQSSSFLPFGNNSLDITIVAQMKKECTLTAKDIIKGLNQALKQLS 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g01198 365 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 198 262 IPR036638 GO:0046983
Aip01g01198 365 MobiDBLite consensus disorder prediction 181 197 - -
Aip01g01198 365 MobiDBLite consensus disorder prediction 131 156 - -
Aip01g01198 365 SMART finulus 200 249 IPR011598 GO:0046983
Aip01g01198 365 CDD bHLH_AtNAI1_like 196 268 - -
Aip01g01198 365 Coils Coil 233 260 - -
Aip01g01198 365 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 194 243 IPR011598 GO:0046983
Aip01g01198 365 Pfam Helix-loop-helix DNA-binding domain 197 244 IPR011598 GO:0046983
Aip01g01198 365 MobiDBLite consensus disorder prediction 57 111 - -
Aip01g01198 365 MobiDBLite consensus disorder prediction 181 200 - -
Aip01g01198 365 PANTHER TRANSCRIPTION FACTOR NAI1 8 364 - -
Aip01g01198 365 PANTHER BHLH TRANSCRIPTION FACTOR 8 364 - -
Aip01g01198 365 Gene3D - 187 258 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g01198 Aip-Chr1 29777255 29780073 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g01198 116 361 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 44.186 5.81e-57 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aip01g01198 HLH 3.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g01198 - - adu:107482661 628.632
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g00505 05 5858222 5859632 Aip01g01198 01 29777255 29780073 PCT