Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g01195 ATGGTTGAAGTTGCAGGAGGCATAGCTAGAAAGATAGAAAGGGCTCCCTGTTGTGACAAGGTGGGACTCAAGAAAGGCCGCTGGACAAAAGAGGAGGATCAAATCTTGATCAACTACATTCAAGCCAATGGAGAAGGTTCTTGGAGGGCTTTGCCTAAGAATGCTGATTTAGCATATGGGACAAGTCAAGCATGGATATAA 201 0.4478 MVEVAGGIARKIERAPCCDKVGLKKGRWTKEEDQILINYIQANGEGSWRALPKNADLAYGTSQAWI 66
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g01195 66 Pfam Myb-like DNA-binding domain 25 53 IPR001005 -
Aip01g01195 66 Gene3D - 22 60 - -
Aip01g01195 66 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 20 49 IPR017930 -
Aip01g01195 66 CDD SANT 27 54 IPR001005 -
Aip01g01195 66 SUPERFAMILY Homeodomain-like 20 54 IPR009057 -
Aip01g01195 66 ProSiteProfiles Myb-like domain profile. 20 53 IPR001005 -
Aip01g01195 66 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 13 57 - -
Aip01g01195 66 PANTHER MYB TRANSCRIPTION FACTOR 13 57 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g01195 Aip-Chr1 29702323 29703777 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g01195 14 57 MYB Transcription Factor Family AT2G47460 81.818 1.10e-21 84.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Aip01g01195 Myb_DNA-binding 1.4e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g01195 K09422 - jre:108991418 89.7373