Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g01187 ATGGCTGTGAATGAATTAGACACGGAACAAGACCTTGCACCATCAAAGAAGAAGCCACTTTCTGAGGATGAGAAGAGGAAGAAGAAAATTGTGCCTGGGAGTTTGATGAAAGCGGTTGTGAGGCCTGGTGGTGGTGATTCTGGACCTTCAGATGGTGATCAGGTTATTTATCATTCCACAGTTCGAACATTAGACGGAGTGCTTGTGGAATCTACTAGGTCTGATTATGGAGGCAAGGGCACACCAATAAGACATGTTTTAGGCAAAAGCAAGATATTATTGGGCTTGCTGGAAGGAATCCCAACAATGTTGAAGGGTGAAGTGGCAATGTTCAAGATGAAGCCTCAGATGCACTATGGTGAGGATGATTGTCCTATTTCTGCTCCTGATAGTTTTCCAAAGGAGGATGAACTTCACTTTGAAATTGAGCTGATAGAATTTTTCAAAGCCAAGGCAAGGATTTACATTATACATTTCACCATACAACTATTTTTATTACTGCAGGTTATTAATGAAGGTCAGGGTTGGGAATCTCCAAGAGAACCTTACGAAGTGAAGGCTTGGATTTCAGCAAAGACAGCTACAGGGAAATTGATTATGTCACATACAAAAGGAGAACCATACTTCTTTACATTTGGAAAATCAGAGGTACCTAAAGGTCTTGAAATGGGAATAGGAACAATGACTCGGGAAGAGAAGGCTGTTATATATGTTACAAGTCAGTATTTAACTCAGTCTCCACTGATGCCTGTAATAGAGGATTACGATGAAGTGCAGTTTGAGGTGGAGCTCGTCCACTTTATTCAAGTGAGGGACATGCTTGGAGATGGGCGCCTAATAAAGCGCCGCATTCGTGATGGCAAAGGTGACTTCCCAATGGATTGCCCTCTTCATGACAGCCTACTTCGTGTACATTACAAGGGCACGATTGTCAATGAAGAAAATAGAGTATTCTACGATACAAGAGTTGATAATGATGGTGAGCCTTTGGAGTTCTGCTCTGGAGAAGGTCTGGTGCCAGAAGGATTTGAAATGAGTGTTCGTCTGATGCTTCCTGGAGAGATAGCTCTTGTCTCATGCCCCCCTGACTATGCATATGATAAGTTTCCAAGGCCAGCAAATGTCCCTGAGGGTGCTCATATTCAATGGGAGATTGAACTTCTTGGTTTTGAAATGCCAAAGGACTGGACTGGATTGGACTTTAATAGTATAATGAATGAGGCTGAGAAGATCAGAAACACGGGTAACAGGCTATTCAAAGAAGGAAAATATGAACTTGCAAAGGCAAAGTATGAAAAGGTGCTACGAGAGTTTAATCATGTTAATCCACAAGATGATGAAGAAGGAAAAATATTTGCAGATACACGGAATTTGTTACACCTTAATGTTGCTGCGTGCTATCTGAAAGTAGGAGAATGCAGAAAGTCCATTGAGACTTGCAACAAGGTTTTGGAAGCAAAGCCTGCACATGTCAAGGGTTTATATCGTCGTGGAATGGCCTACATGGCTAATGGAGATTTTGAAGAAGCAAGGAATGATTTCAAAATGATGATGAAAGTTGACAAGTCAGCTGAACCTGATGCAACTGCAGCTCTTTCGAAATTGAAGCAGAAGGAACAGGAAGTTGAGAGGAAAGCTCGGAAACAATTTAAAGGGCTTTTCGACAAGAAGCCTGGAGAGATTTCAGAAGTCAAAGCTGATGAAGATGGAAATCCAAGTACAAGTGAAAACCAGGACAGTGAAGAACACAGTGACGCCGATGGAACAAATTCAGAGGATTCTCATGAAGCTGCACCTGACGCACGTCCAAGGAGTTGGATCTCTCTCTTTTGGCCTACTGGCAAAAGAATTTTTGAGTCTCTTGGTCTGCAAAGATGTACCATACTGTGA 1890 0.4212 MAVNELDTEQDLAPSKKKPLSEDEKRKKKIVPGSLMKAVVRPGGGDSGPSDGDQVIYHSTVRTLDGVLVESTRSDYGGKGTPIRHVLGKSKILLGLLEGIPTMLKGEVAMFKMKPQMHYGEDDCPISAPDSFPKEDELHFEIELIEFFKAKARIYIIHFTIQLFLLLQVINEGQGWESPREPYEVKAWISAKTATGKLIMSHTKGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTQSPLMPVIEDYDEVQFEVELVHFIQVRDMLGDGRLIKRRIRDGKGDFPMDCPLHDSLLRVHYKGTIVNEENRVFYDTRVDNDGEPLEFCSGEGLVPEGFEMSVRLMLPGEIALVSCPPDYAYDKFPRPANVPEGAHIQWEIELLGFEMPKDWTGLDFNSIMNEAEKIRNTGNRLFKEGKYELAKAKYEKVLREFNHVNPQDDEEGKIFADTRNLLHLNVAACYLKVGECRKSIETCNKVLEAKPAHVKGLYRRGMAYMANGDFEEARNDFKMMMKVDKSAEPDATAALSKLKQKEQEVERKARKQFKGLFDKKPGEISEVKADEDGNPSTSENQDSEEHSDADGTNSEDSHEAAPDARPRSWISLFWPTGKRIFESLGLQRCTIL 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g01187 629 SMART tpr_5 408 441 IPR019734 GO:0005515
Aip01g01187 629 SMART tpr_5 457 490 IPR019734 GO:0005515
Aip01g01187 629 SMART tpr_5 491 524 IPR019734 GO:0005515
Aip01g01187 629 Coils Coil 528 548 - -
Aip01g01187 629 SUPERFAMILY FKBP-like 165 267 - -
Aip01g01187 629 Gene3D - 3 155 IPR046357 GO:0003755
Aip01g01187 629 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE PASTICCINO1 70 576 IPR031135 GO:0030154|GO:0042761|GO:0099402
Aip01g01187 629 Pfam Tetratricopeptide repeat 492 515 IPR019734 GO:0005515
Aip01g01187 629 SUPERFAMILY TPR-like 406 546 IPR011990 GO:0005515
Aip01g01187 629 Gene3D - 270 390 IPR046357 GO:0003755
Aip01g01187 629 MobiDBLite consensus disorder prediction 1 33 - -
Aip01g01187 629 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 300 388 IPR001179 GO:0003755
Aip01g01187 629 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 179 265 IPR001179 GO:0003755
Aip01g01187 629 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 49 145 IPR001179 GO:0003755
Aip01g01187 629 MobiDBLite consensus disorder prediction 10 31 - -
Aip01g01187 629 Gene3D - 162 269 IPR046357 GO:0003755
Aip01g01187 629 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 201 268 IPR001179 GO:0003755
Aip01g01187 629 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 299 391 IPR001179 GO:0003755
Aip01g01187 629 ProSiteProfiles TPR repeat profile. 491 524 IPR019734 GO:0005515
Aip01g01187 629 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 52 148 IPR001179 GO:0003755
Aip01g01187 629 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 70 576 - -
Aip01g01187 629 MobiDBLite consensus disorder prediction 559 605 - -
Aip01g01187 629 SUPERFAMILY FKBP-like 273 390 - -
Aip01g01187 629 MobiDBLite consensus disorder prediction 559 600 - -
Aip01g01187 629 Gene3D Tetratricopeptide repeat domain 402 556 IPR011990 GO:0005515
Aip01g01187 629 SUPERFAMILY FKBP-like 25 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g01187 Aip-Chr1 29125259 29133901 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g01187 30 556 Calmodulin-binding Proteins AT5G48570 28.864 2.21e-57 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g01187 - - gmx:100818201 1079.7