Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g01180 ATGAGACAGAATGCAATTTCAGACCATACAATTGTCCTTATGCTGGATCAGAGTGCTCTGTTGCTGCGAACATTCCTTTCCTTGTTGCACATCTGCACAGGATGCATATTCAACCACCGCTATGTAAAATCAAATCCCCGTGAAGTTGAGAATGCAACATGGATGCTCATGGATTCCCCTGTATTCAGTTTTATCAACAGTTTGTCGCCTATAAAGCCCGTGAAGTCTGCCCAGATTGGTCAAACATTTAGCTCGCTTAGCTTTCCTTCCCCTCCGCGTGCTTTTACTTCATCCAATCTCACCTGTTTCAAGGAATCAAAAGTTCTCAGGAGGCATAACCCTTTTGGGGCATCAAGGCCTGGGTTGTCATCTGAAGATGGTAATAAATTTCAGACAAGTGAAGAGGCTATTGCAGATTCATTTCATCCATATCATAACTCGAGGGAATCTCAGGGAAATTTTCATGATGGAATATCTGTAGTTGATGATTCGATTGCTCTACCTGGTGAGCACACAGACTTCTCAGCTGAGATACTGCAGGCCTTAAATTATAATAATTGTGGTAACCCTGGCTCTGATCCTGGTCATGAGGCTAACTCTCTTGAAGTGTTTAATCAGGGGTTGTGTCAATTTGATCCGAAGGGCCAAGAATCAGAGTGTAATTGGGATAATTTAATCTCTGGAGATACTGATTTCTTCGTTTTCAATTCCCCAAATGACGCAGCTTTTAAGGGTATAATGCAGAAACCAGATTCTCATTTTATGTCTCTGGTACTGGAATCTTCCATATATAATGGTCTGAGAGATAGCAAACTTAAAATAGAAGATTATCGTCCTGAGCCCTTAGCAATCATAGACCAAATGCAGGACAAACATTGCCTTGCCATGACTAGCAAAACAAAAGAAAAACCAAATGTTGAGGTTGTTTCTGTAATGAACTGTGGTACACGGAGGCGATGTCTAGACTTTGAGACTGACAGTGTGCAAAGGAAGAACTCAGATGATAATTTAAAATCCGGTTCTCTTGGATATGAAAAACAACTGGTTTCTGCAAAACGCAAAAGCAGTTCACAGCAATGCATTATGCCTGCAGTTGGCTTACATTTGAATGCACCCGACAAAGAAGTCATAAGTAATGATGAGTCGTCTTGCGGAATTCATCTTAATCTTCCCAGTTGCACTTCCGTGCAAATCTATACCAGCTATGAACATCAGGAACCACTAGCAATAGAAGTGGATTCATCAAACATTGGGCCTCAGCCAGCTAAGGATAATTCTCATGCATTAGATTCCACTGTTAATGATGTCAGTCAGAATAGTCCCAAAAAGAAAAGACATGGAGACTGCAAGCGTTGCAAGTGCAAGAAATCAAAGTGTTTGAAGTTATATTGTGAGTGCTTTGCTGCTCGTGACTACTGCACAGGCAACTGCTCATGTAAGGATTGCTGCAACAAACTTGTTCATAAAGACAAAGTCATTCAAGCTCACAAGCAGATCGAGTCTCGCAATCCTCTGGCTTTTGCTCCTAAAGTCATTCCTGAACCTGAAATTGGGAATGATCCAAATAAAACTCCAGCACCAGCACGACACAAGAGGGGATGCAACTGCAAACAATCAGTCTGCATAAAGAAATACTGTGAATGCTTTCAGGCTGGTGTTGGATGCTCTTTAAGCTGTAGATGTGAAGGGTGTAAGAACACATTTGGTAGAAAGGAGGGTGAGTTGTCCCTTCTTTTGCAAATTAAATACCCATCAGAATCTAACTATTTTATTGTTTCAGGCGCTAATTCTATGGGAGTAGAAGCCCAGCTAGAAGTAGAAACAGAGGCCTGTGGAAAAGTTGTTGAAAAAGCATCACAGATAATTGAAGTTCAGAACTCCGATAATCATCCAGATTTTATTCCAATCTCTACGCCATTCCCTCTGTTTAGTTCATTGTCAGAGGTGAAACCAAACACTCGTTGGTCTCAGCCACCTAAGCATTCTCAAGCTGTTTCGGACCAGGAAATGACAGATGTTCTTGGAGGCCGAGGCAGAAGTGATAGGTCTCCCATGACCATCAAAACTTCTTCTCCAAGTGGGAAGAGGATTTCCACTTCTAAGGGTGAATTGACAATTTCTTTTCCTTCTCCTAATCATCATCGTTAG 2148 0.4157 MRQNAISDHTIVLMLDQSALLLRTFLSLLHICTGCIFNHRYVKSNPREVENATWMLMDSPVFSFINSLSPIKPVKSAQIGQTFSSLSFPSPPRAFTSSNLTCFKESKVLRRHNPFGASRPGLSSEDGNKFQTSEEAIADSFHPYHNSRESQGNFHDGISVVDDSIALPGEHTDFSAEILQALNYNNCGNPGSDPGHEANSLEVFNQGLCQFDPKGQESECNWDNLISGDTDFFVFNSPNDAAFKGIMQKPDSHFMSLVLESSIYNGLRDSKLKIEDYRPEPLAIIDQMQDKHCLAMTSKTKEKPNVEVVSVMNCGTRRRCLDFETDSVQRKNSDDNLKSGSLGYEKQLVSAKRKSSSQQCIMPAVGLHLNAPDKEVISNDESSCGIHLNLPSCTSVQIYTSYEHQEPLAIEVDSSNIGPQPAKDNSHALDSTVNDVSQNSPKKKRHGDCKRCKCKKSKCLKLYCECFAARDYCTGNCSCKDCCNKLVHKDKVIQAHKQIESRNPLAFAPKVIPEPEIGNDPNKTPAPARHKRGCNCKQSVCIKKYCECFQAGVGCSLSCRCEGCKNTFGRKEGELSLLLQIKYPSESNYFIVSGANSMGVEAQLEVETEACGKVVEKASQIIEVQNSDNHPDFIPISTPFPLFSSLSEVKPNTRWSQPPKHSQAVSDQEMTDVLGGRGRSDRSPMTIKTSSPSGKRISTSKGELTISFPSPNHHR 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g01180 715 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 532 567 IPR005172 -
Aip01g01180 715 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 450 485 IPR005172 -
Aip01g01180 715 ProSiteProfiles CRC domain profile. 448 569 IPR005172 -
Aip01g01180 715 MobiDBLite consensus disorder prediction 416 444 - -
Aip01g01180 715 MobiDBLite consensus disorder prediction 683 715 - -
Aip01g01180 715 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 53 701 - -
Aip01g01180 715 MobiDBLite consensus disorder prediction 651 715 - -
Aip01g01180 715 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 53 701 IPR044522 GO:0003700
Aip01g01180 715 MobiDBLite consensus disorder prediction 418 438 - -
Aip01g01180 715 MobiDBLite consensus disorder prediction 651 669 - -
Aip01g01180 715 SMART CXC_2 529 570 IPR033467 -
Aip01g01180 715 SMART CXC_2 447 488 IPR033467 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g01180 Aip-Chr1 28889190 28894008 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g01180 56 573 CPP Transcription Factor Family AT4G14770 37.708 1.01e-90 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Aip01g01180 TCR 1.6e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g01180 - - aip:107628213 1432.93