Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g01174 ATGATGAGGCTGAAGACATATGCCGGTCTCAGTTTGATTGCAACCCTGGCTATCACATATCATGCATTTAACAGTAGAGGCCAGTTTTATCCGGCAATGGTGTATCTTTCAACTTCCAAGATCAGCTTAGTGCTTCTTCTCAACATGGGTTTGGTTATTATGTGTATTCTATGGCAGTTGACTAAAAAGGTATTCCTGGGTTCTCTTAGAGAAGCTGAGGTAGAAAGGCTTAACGAGCAATCGTGGAGGGAGGTTATGGAAATCCTCTTTGCCATTACTATTTTTAGGCAGGATTTCTCAGTTACGTTTCTTGCGATGGTCACAGCGCTATTGTTGATTAAAGCTTTGCATTGGTTGGCTCAAAAGAGGGTTGAGTACATTGAGACAACTCCTACGGTGCCCATGTTGTCCCATGTTCGGATTGTATCTTTTATGGGTTTCCTCCTTCTCCTCGATAGCCTATTCTTATACAGTAATCTGAAGCATCTGCTACAAACATGGCAACCGTCAGTTTCGATATTCTTCTCTTTTGAGTACATGATACTGGCAACGACAACAGTGTCGATTTTTGTAAAATATCTTTTCTATGTTAGTGACATGCTCATGGAAGGACAATGGGAAAGGAAACCAGTCTTCACATTCTACTTGGAACTTATCAGGGACTTGCTTCACTTGTCTATGTATCTGTGCTTCTTCCTCGTAATTTTTGTAAACTATGGTGTTCCTTTGCACTTAATACGGGAGCTCTATGAGACATTTAGGAACTTCAAAGTCCGTGTTGCAGATTACATACGATATCGTAAGATCACTTCAAATATGAACGACCGTTTTCCAGATGCAACGCCTGAAGAGCTTAATGCAAGTGATGCAACTTGCATTATCTGTCGTGAAGAGATGACTACTGCCAAGAAACTTATATGTGGACATTTGTTTCATGTTCATTGCCTCCGATCATGGTTGGAGCGGCAACATACTTGCCCTACCTGCAGAGCCCTGGTTGTTCCCCCAGAAAATGGGGCAACAGCAACTGTAGGCCAGCAAGGAGCACAACCAGATGGTCATCGACAGGGAACAGGGACTAGCACTGGAAGCACAGCTCAAAATGAGGTTGGCAGTGGTGGGGCAATTGATAATTTGAGTCAGCATCAAGCCCGACTTCAAGCTGCAGCTGCAGCAGCAGCTTCAATATATGAGAAGTCTTATGTTTATCCCTCCCCAACATCTTTAGTGTGCTCTCCTGGGTACACTCTTCAACCCCCAGTTCAGATGTCTATGGGCAAATCTGTTAACACGGCACTCAATGGAGAACAAGCTTCTGGTGAACAGGCACAACAGCAATTTGTTCTCCCTGGTGGACCAATGATATCCTTTCCTCAAATGGGGCCCTTCCATTTTCTTCCTTCCCAAACACGCGGAGCCCCTGCGAATTATGGAGTGGAGTTTGGAGTTGACCCAAATATGCCAAGCTCTCACCTGGAAGCTCATAGAAAACTACTTCAATATCAGATTGAGATTCTGCAAAATCAGCTCAAGCTTTTGCAGAGGACAAAGGTTGAAACAGGTGTAGATGAGGGTACATCTTCATCATCCACATCGACAGCAGATAGCAGAGGCAAGCAAATAGCATCGAGTCATGAGATTCATCGTGAAAAAGAATAA 1659 0.4376 MMRLKTYAGLSLIATLAITYHAFNSRGQFYPAMVYLSTSKISLVLLLNMGLVIMCILWQLTKKVFLGSLREAEVERLNEQSWREVMEILFAITIFRQDFSVTFLAMVTALLLIKALHWLAQKRVEYIETTPTVPMLSHVRIVSFMGFLLLLDSLFLYSNLKHLLQTWQPSVSIFFSFEYMILATTTVSIFVKYLFYVSDMLMEGQWERKPVFTFYLELIRDLLHLSMYLCFFLVIFVNYGVPLHLIRELYETFRNFKVRVADYIRYRKITSNMNDRFPDATPEELNASDATCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPPENGATATVGQQGAQPDGHRQGTGTSTGSTAQNEVGSGGAIDNLSQHQARLQAAAAAAASIYEKSYVYPSPTSLVCSPGYTLQPPVQMSMGKSVNTALNGEQASGEQAQQQFVLPGGPMISFPQMGPFHFLPSQTRGAPANYGVEFGVDPNMPSSHLEAHRKLLQYQIEILQNQLKLLQRTKVETGVDEGTSSSSTSTADSRGKQIASSHEIHREKE 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g01174 552 Pfam Ring finger domain 291 330 IPR001841 -
Aip01g01174 552 MobiDBLite consensus disorder prediction 340 375 - -
Aip01g01174 552 SMART ring_2 292 329 IPR001841 -
Aip01g01174 552 PANTHER RING ZINC FINGER PROTEIN 1 462 - -
Aip01g01174 552 SUPERFAMILY RING/U-box 272 336 - -
Aip01g01174 552 MobiDBLite consensus disorder prediction 520 552 - -
Aip01g01174 552 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 264 337 IPR013083 -
Aip01g01174 552 ProSiteProfiles Zinc finger RING-type profile. 292 330 IPR001841 -
Aip01g01174 552 Coils Coil 496 516 - -
Aip01g01174 552 CDD RING-H2_synoviolin 289 330 - -
Aip01g01174 552 MobiDBLite consensus disorder prediction 520 540 - -
Aip01g01174 552 PANTHER - 1 462 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g01174 Aip-Chr1 28581263 28586108 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g01174 1 546 C3H Transcription Factor Family AT3G16090 63.370 0.0 664
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g01174 K10601 - gmx:100816441 841.262