Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g01158 ATGAAGAGTATAGTGGAAAATGATGATGGCGGTGTTGAGCTTAATAATGAAAACAACTGGTTGGGGTTTTCACTCTCTTCTCCACACCATCATGTTGATTCTTCTTCTTCCTCCTCTGCTGCTTCTGTTCCTCCAACAAGCTTCTACATGAACCACCATGCTTCTCATCTTAGCAGCTATGGATTCTACTACGGAATTGAACCTGACAACAATAATAATAACGTTAGCCTGTATTCTGGTTTTCCAGTTATGCCCCTCAAATCTGATGGCACTCTCTACGGAATGGACCCTCTAATCAACAGGGCACACCCACAACAAGTGATTGGTTCAAGTTCAACGCCAAAACTGGAGAATTTGTTAGGTGGCGGCGATTTGATGGAGACACCTCATCACTATGAATGTAGTGTAGCGGAAGCAATGCCTCTCAGCCTGGACACCATTTTTCATAGAAACAACCACCAACCACACTTGTCATACTACCATGGGCTTCTAGAAGGTTCCAACAAGCAAAGTACGCAAGCTTCAGACACCAACGACAACAATCTCAAGAACTGGGGGGTGATTGAGGTGAATAATGGAGGTGGTGAATTATTAGGAGCTTCTTCAATTGGAACAATGAGTTATGGGGGGGACTTGCAGTCTTTGAGCTTGTCAATGAGTCCGAGCTCGCAATCGAGCTGCGTCACGAGTTCGCAGCAGCGTGTGAGTGTCAATGGCATTGATTCCATTGTTGGCAGCATGGATGCAACAAAGAAGAGGGGTTCTGAAAAGGTTCAACAGAAGCATATTGTTCATAGAAAATCCATTGACACGTTTGGGCAAAGAACCTCACAGTATAGAGGTGTAACAAGGCATAGATGGACTGGTAGATATGAAGCACATCTATGGGACAATAGCTGCAAGAAAGAAGGCCAAAGTAGGAAAGGAAGGCAAGGGGGTTATGATATGGAAGAAAAAGCTGCGAGAGCTTATGATATGGCGGCACTCAAGTACTGGGGACCCTCCACACACATTAACTTCCCTTTGGAAAATTATCAAAATCAACTTGAGGAAATGAAGAACATGACCAGACAAGAATATGTTGCTCATTTAAGAAGAAAAAGCAGCGGATTCTCAAGGGGAGCTTCAATGTACAGAGGAGTAACTAGCAGACATCACCAACATGGAAGGTGGCAAGCTCGAATTGGAAGGGTAGCTGGAAACAAAGATCTATATCTTGGAACCTTCAGCACACAAGAGGAAGCAGCAGAAGCTTATGATATTGCAGCCATAAAATTCAGAGGGGTTAATGCCGTAACAAACTTTGACATAACAAGATATGATGTCGAAAAAATCATGGCAAGCAACAACCTTCTAAGCAGTGAGCTAGCACGGCGGAACAAAGAGGTTCTTGTTGGCAGA 1401 0.439 MKSIVENDDGGVELNNENNWLGFSLSSPHHHVDSSSSSSAASVPPTSFYMNHHASHLSSYGFYYGIEPDNNNNNVSLYSGFPVMPLKSDGTLYGMDPLINRAHPQQVIGSSSTPKLENLLGGGDLMETPHHYECSVAEAMPLSLDTIFHRNNHQPHLSYYHGLLEGSNKQSTQASDTNDNNLKNWGVIEVNNGGGELLGASSIGTMSYGGDLQSLSLSMSPSSQSSCVTSSQQRVSVNGIDSIVGSMDATKKRGSEKVQQKHIVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQSRKGRQGGYDMEEKAARAYDMAALKYWGPSTHINFPLENYQNQLEEMKNMTRQEYVAHLRRKSSGFSRGASMYRGVTSRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGVNAVTNFDITRYDVEKIMASNNLLSSELARRNKEVLVGR 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g01158 467 CDD AP2 277 341 IPR001471 GO:0003700|GO:0006355
Aip01g01158 467 SUPERFAMILY DNA-binding domain 277 343 IPR016177 GO:0003677
Aip01g01158 467 Gene3D AP2/ERF domain 277 343 IPR036955 GO:0003700|GO:0006355
Aip01g01158 467 Gene3D AP2/ERF domain 377 438 IPR036955 GO:0003700|GO:0006355
Aip01g01158 467 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT 16 169 - -
Aip01g01158 467 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 16 169 - -
Aip01g01158 467 SMART rav1_2 278 347 IPR001471 GO:0003700|GO:0006355
Aip01g01158 467 SMART rav1_2 377 442 IPR001471 GO:0003700|GO:0006355
Aip01g01158 467 Pfam AP2 domain 278 333 IPR001471 GO:0003700|GO:0006355
Aip01g01158 467 Pfam AP2 domain 378 428 IPR001471 GO:0003700|GO:0006355
Aip01g01158 467 ProSiteProfiles AP2/ERF domain profile. 278 341 IPR001471 GO:0003700|GO:0006355
Aip01g01158 467 PRINTS Ethylene responsive element binding protein signature 418 438 IPR001471 GO:0003700|GO:0006355
Aip01g01158 467 PRINTS Ethylene responsive element binding protein signature 279 290 IPR001471 GO:0003700|GO:0006355
Aip01g01158 467 ProSiteProfiles AP2/ERF domain profile. 377 436 IPR001471 GO:0003700|GO:0006355
Aip01g01158 467 SUPERFAMILY DNA-binding domain 376 437 IPR016177 GO:0003677
Aip01g01158 467 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 179 462 - -
Aip01g01158 467 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT 179 462 - -
Aip01g01158 467 CDD AP2 376 438 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g01158 Aip-Chr1 26948979 26954751 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g01158 1 467 AP2-EREBP Transcription Factor Family AT4G37750 53.529 2.68e-158 458
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Aip01g01158 AP2 5.6e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g01158 K09285 - gmx:100792451 560.451
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g00535 05 6317780 6320743 Aip01g01158 01 26948979 26954751 PCT