Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g01142 ATGATTACGTGGGATTATGGAAAGCATTTGTCAGCGAGTTGCTGTATAGAAAAACGAAAAGTTGGGGTTTACCTTCATGACCCCACCGCATTTCTTGCAGCTGTTGATCCTACTCTTAAACTCAATGCACCTCAGCCCCATTCCTCTCTGAAATTGAAAGAAAAAGGCAATCAAGCTCTACCCACCCATTTACCCAGCCCCGCTGCCCGCAGCACTGCAGCCACGCCAACCACCGTAGCCACCTCAATTTTGGTGTATCTTCGTTTTTGGGAGATGGATCCGTCGGATAGCGATTTTTTCGGATCAGACTCCGATGTTGGGTTCCCTAGAGGAGACGATCTAGACTTTTTAGACGACGATTCAGAGGCTGATGAAGATAGACCTCAAGATAAGAGAACAGCAGAGCTGTCACGAGAAGATATCATGCAACTTCAGTTTACAGATGAGGAAGCTGTCTATCGATTCTACAAGACTTATGCAATGATACATGGTTTCGCTGTGAGGTTGGATGAAGTCAGACGCGATAGTGATGGTTCCGTAATTATGCGCCAAATTGTTTGCAATCGGGCGGGCTCAAGAAAGGAAGTGGTTAAAAAGGACGAAAGAATCAGGGACCACCGACCCCTAACTCGAAGTTGTTGCCCGGCTAGAATTCGTGCAAGACTAGATACAAAAATTCAGCAATGGAAGGTTGTTTCGTTCTACGAAGAGCACCCTCATGAATTAGTTGCTCCACTCGACGTTACCATGATGCCTGAGTATCGCACATTCAGTGTCTCGGATAAAGCTCAGGCGAAGAATTTGCACGACATAGGCATCAGGACCTGTCACATCTTGGGATACTTGGCTGCTCAAAAAGGTGGATATGCAAACTTGCCATTCAATCAAAAAGACATGTACAACCTCATTACTCAATATAGGAAGGAAAAGGTGAAGGGTGGTGATGCAAATGCTGCAATAAGCTATCTGAGAGGTAAAGCTGGGAACGATTCTTATTTCTTTGGCAAGTACACATTAAGTAATGAGAATCGATTAGAAAATTTGTTCTGGGCTGATGGGACTAGCCGCATTGATTATGAGTGCTTTGGGGATGTATTGACATTTGATTCGACTTACAATAGGAATGTCTACAATAAACCACTTGTTATATTTTTTGGTAGCAATCATCATGGGCAGATCGTCATATTCGGTTGTGGTCTTCTTGTTAATGAGGATATTGGTTCATACAAGTGGCTCTTGGAAACTTTTTTGGAAGCAATGGGGAGTAAACACCCTACGGCAGTTGTCACCGACGGAGATCTTTCAATGAGAGAAGCAATTAAACAGGTCTTTCCTTCTGCAACACATCGACTATGTGCATGGCACTTACATAGGAATGCATGCGAGAAGGTTAAGAACAATGGATTTCTAATGGACTTCAAGCAATTGATTTATGCCAATGTGAGTGTTGAAGAGTTTGAGGTCAGGTGGGAAGACATGGTGGACAGGTATAACTTATCAAGCAACTCTTGGGTCGTCCAAACCTATGAGATGAGGAATCTATGGGCTCTTGCATATTTGAGGGACCAATTTTTTGGGCGAATCAGGACAACATCCCAGTGTGAAGGGATTAACTCTCTAATAAAAGCATATGTGAGAAAGAAAGATACCCTTCTTGAATTCATCAATAACATGGAGACCGTGGTTAGCCATTACAGGAACAATGAAAGAGTCGCAGAGTTCAATAGTAAATATACCGCTCCAGTACTTGTGACTTCTTTGCCGACACTTGAAGATTTTGCTGCAAAGACTTTCACTCGTAACATGTTTCGGGAGGTCAGGAAGAAAATTGAGGATGCTTGTGCAATGAATACAGAGTTGGTAATTCAGGATGGTGGAAAACTATACTTCAAGTGTAACATTTTTGGAGTGCCAGAGATTCATCATGTGGTTGAGTTTGACAGAGTTCGGGGGATTCTCCGTTGCAAGTGTCTGTGGTTCGAAAATAGAGGAATTCCCTGCATGCATATATTCGCCTGCCTAAAGCACCAACACGTTGAAGTTATTCCAGAAAGCTTAGTGTGCAAGCGTTGGACGAAGAATGCCAAGAGTGACTTCATGAAGTCAAACGTCGATGATCCAAGTGATTCTGATAAGGTACTAAAGTGTCGTTTGGGTGTGTTAGGTGCTGAGTGTTCTAGGTTGATGGATTTGGCCTGTAAGAATTCAAGTGATTTTGTCGAAGTAATGAATAGTGTTGTCGACACAATTACAAAACTCCAAAAGCGAGGTGAAAATCCACGTAACGCTAACTTAGACGATGACTGTGTTGGTGACCCATTGGTGGTGAAGAGGCACTACAACAAAAGTTGTCCTAATGCTCCTGGTAGAATCCCAAAGGAGCCAGTAGACGATTATACAGAAACGAATATCAGCAGCATCCTCCCTAAGCACAAAAGACATGACAGTGTGAAAAATCAGCATAAGATGGAAAAAGATAGGAACATTGGTGGTGGAACAGCACCAACCTCAGCAGCTAAGTCGGCTTTTATTGATCAAGTGAAAACATCAAGTCTTGGTCCCAATATCCCGGTTTGTGCGTCTACAAGTAACGAAGAGTCCGGGATGAGTTCCATACTAGCTGGGTCGTTTGTTGTGGCCCCTGAAACTGGAATGGCAGCTTGA 2664 0.4332 MITWDYGKHLSASCCIEKRKVGVYLHDPTAFLAAVDPTLKLNAPQPHSSLKLKEKGNQALPTHLPSPAARSTAATPTTVATSILVYLRFWEMDPSDSDFFGSDSDVGFPRGDDLDFLDDDSEADEDRPQDKRTAELSREDIMQLQFTDEEAVYRFYKTYAMIHGFAVRLDEVRRDSDGSVIMRQIVCNRAGSRKEVVKKDERIRDHRPLTRSCCPARIRARLDTKIQQWKVVSFYEEHPHELVAPLDVTMMPEYRTFSVSDKAQAKNLHDIGIRTCHILGYLAAQKGGYANLPFNQKDMYNLITQYRKEKVKGGDANAAISYLRGKAGNDSYFFGKYTLSNENRLENLFWADGTSRIDYECFGDVLTFDSTYNRNVYNKPLVIFFGSNHHGQIVIFGCGLLVNEDIGSYKWLLETFLEAMGSKHPTAVVTDGDLSMREAIKQVFPSATHRLCAWHLHRNACEKVKNNGFLMDFKQLIYANVSVEEFEVRWEDMVDRYNLSSNSWVVQTYEMRNLWALAYLRDQFFGRIRTTSQCEGINSLIKAYVRKKDTLLEFINNMETVVSHYRNNERVAEFNSKYTAPVLVTSLPTLEDFAAKTFTRNMFREVRKKIEDACAMNTELVIQDGGKLYFKCNIFGVPEIHHVVEFDRVRGILRCKCLWFENRGIPCMHIFACLKHQHVEVIPESLVCKRWTKNAKSDFMKSNVDDPSDSDKVLKCRLGVLGAECSRLMDLACKNSSDFVEVMNSVVDTITKLQKRGENPRNANLDDDCVGDPLVVKRHYNKSCPNAPGRIPKEPVDDYTETNISSILPKHKRHDSVKNQHKMEKDRNIGGGTAPTSAAKSAFIDQVKTSSLGPNIPVCASTSNEESGMSSILAGSFVVAPETGMAA 887
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g01142 887 Pfam FAR1 DNA-binding domain 154 243 IPR004330 -
Aip01g01142 887 PANTHER OS02G0262500 PROTEIN 140 747 - -
Aip01g01142 887 ProSiteProfiles Zinc finger SWIM-type profile. 640 678 IPR007527 GO:0008270
Aip01g01142 887 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 140 747 IPR031052 GO:0006355
Aip01g01142 887 Pfam MULE transposase domain 365 459 IPR018289 -
Aip01g01142 887 MobiDBLite consensus disorder prediction 811 837 - -
Aip01g01142 887 MobiDBLite consensus disorder prediction 811 828 - -
Aip01g01142 887 MobiDBLite consensus disorder prediction 115 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g01142 Aip-Chr1 25940847 25945450 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Aip01g01142 MULE 8.2e-27 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g01142 - - aip:107620373 1535.01