Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g01137 ATGGAGCTTAAGCACCAACTTGGTCTTCTTTGCGTTATATTGCTTTTACCAGCACTAAGCATCGCCACTAATAATGACTATTGCCCTTGGAATTCTTATAAGAACTCTAGGGCATCCTATTATGGTACCCGTGATGGTTATGGGACTCCAAGTGGAGCATGTGGATTTGGCGAATATGGAAGGATGGACAATGATGGCAAGGTTGCAGCGGTATCTGGGCTATGGAAAGGTGGAAGTGGCTGCGGTGCATGCTATCAGGTTAAATGTAAAGTACCAACATTGTGCAATGTCAACGGGGTAACCGTGGTGGCAACAGATTATGGTGAGGGAGACAGAACAGATTTCATACTGAGCCCACGCGCTTTTGAGAGTTTGGGTGTGAGTCTTAATGCATCTGAAGAGCTCAAAAAGTACGGTACTCTTGATATTGCATACAAGAGAGTTCCTTGCAATGGCAAGATTGTTATTAAGATCCACGAAAGTAGCAGCAACCCTGGATACTTTGCTATGGTGCTTCTCAGCCATGGTGGATTATACGATGTCACTAGTGTTGAATTCTGGGAGGATTCACGCAAACAATGGACTCCATTGCGGAGAGCTTATGGGGCAGTGTTTGACTATGCTAACCCACCAAGGGGTCCACTCTTCTTGAGGTTCCAAGATACCGGTTGTCATGGAGCTTATTCGCAAGAACTAAATAAACCTATCCCTGCTAATTGGCAGCCGAAAATGATTTTTACCTTTTGA 747 0.4471 MELKHQLGLLCVILLLPALSIATNNDYCPWNSYKNSRASYYGTRDGYGTPSGACGFGEYGRMDNDGKVAAVSGLWKGGSGCGACYQVKCKVPTLCNVNGVTVVATDYGEGDRTDFILSPRAFESLGVSLNASEELKKYGTLDIAYKRVPCNGKIVIKIHESSSNPGYFAMVLLSHGGLYDVTSVEFWEDSRKQWTPLRRAYGAVFDYANPPRGPLFLRFQDTGCHGAYSQELNKPIPANWQPKMIFTF 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g01137 248 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 166 248 IPR007117 -
Aip01g01137 248 PANTHER EXPANSIN-B1-LIKE PROTEIN 3 243 - -
Aip01g01137 248 SUPERFAMILY PHL pollen allergen 152 247 IPR036749 -
Aip01g01137 248 Gene3D - 152 247 IPR036749 -
Aip01g01137 248 Gene3D - 17 151 IPR036908 -
Aip01g01137 248 PRINTS Expansin/Lol pI family signature 32 47 IPR007118 GO:0005576
Aip01g01137 248 PRINTS Expansin/Lol pI family signature 71 89 IPR007118 GO:0005576
Aip01g01137 248 PRINTS Expansin/Lol pI family signature 138 154 IPR007118 GO:0005576
Aip01g01137 248 PRINTS Expansin/Lol pI family signature 194 208 IPR007118 GO:0005576
Aip01g01137 248 PRINTS Expansin/Lol pI family signature 234 248 IPR007118 GO:0005576
Aip01g01137 248 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 51 151 IPR007112 -
Aip01g01137 248 Pfam Expansin C-terminal domain 155 221 IPR007117 -
Aip01g01137 248 Pfam Lytic transglycolase 72 137 IPR009009 -
Aip01g01137 248 PANTHER EXPANSIN-B3 3 243 - -
Aip01g01137 248 SUPERFAMILY Barwin-like endoglucanases 25 151 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g01137 Aip-Chr1 25798512 25800717 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g01137 1 240 Expansin Gene Family AT4G17030 45.935 1.76e-67 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g01137 - - adu:107485050 391.349