Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g01127 ATGGGTGCTCCTAAACAGAAATGGACTGCAGAAGAAGAAGCAGCACTTAAAGCTGGAGTAGTCAAACATGGAGCAGGAAAATGGCGCACTATACTTACAGATCCAGAGTTTAGTTCCATCTTGCGCATGCGCTCCAATGTAGATCTCAAGGATAAATGGAGGAATATAAATGTCACAGCAATATGGGGATCCCGGCAGAAGGCCAAGCTAGCCCTTAAAAAGAACCTACTACTACCAGCCCCTAAAATCGACAACGATCATATGGCCTTGAGTACAGCAGTTCGACATGATGAAAATGTTCTCGAAACTAAGCCCCTAGCAATATGTGGTCTGTCATTGCCATCTCATAATTCAAAACAACAATTATCAAGGTTAGAAAGTTTCCTCTATTTTCTATCTGAAAATTATCAATCTCCTACAAACCTTGGAAAGTTACTGCGAACAAGACTGAAGCATATGGTGGATATTGGCAAAATAATCAAGGTACAACAGAGGTACAAGATTAGTCCAAGTTCGACAGGCTCTGAGAAAAGAAGATACTCTTCTTCCACTTTACCGCTGGAAGGGAGGCCCAGAGATTCTCCAGAAGCAGAGAAGAGTCATGATGTCAACATCCTTTCAAAATCCCAAGTTGATGCGGATATATCGAAAGCAAAGAGCATGACAGCTCAAGAGGCAGCTGTGGCAGCTGCAAAGGCAGTTGCAGAGGCAGAAGCCGCCATTGCTGAAGCAGAGTTAGCAGCGAGGGAGGCAGAGGCTGCAGAAGCTGAGGCAGAGGCTGCTCATGTGTTTGCAAAAGCAGCAATGAAGGCACTAAAATGCAAAACATCTCTTATCTGGTAG 843 0.4425 MGAPKQKWTAEEEAALKAGVVKHGAGKWRTILTDPEFSSILRMRSNVDLKDKWRNINVTAIWGSRQKAKLALKKNLLLPAPKIDNDHMALSTAVRHDENVLETKPLAICGLSLPSHNSKQQLSRLESFLYFLSENYQSPTNLGKLLRTRLKHMVDIGKIIKVQQRYKISPSSTGSEKRRYSSSTLPLEGRPRDSPEAEKSHDVNILSKSQVDADISKAKSMTAQEAAVAAAKAVAEAEAAIAEAELAAREAEAAEAEAEAAHVFAKAAMKALKCKTSLIW 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g01127 280 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Aip01g01127 280 PANTHER SINGLE MYB HISTONE 4 131 276 IPR044597 GO:0003691
Aip01g01127 280 PANTHER SINGLE MYB HISTONE 4 1 126 IPR044597 GO:0003691
Aip01g01127 280 MobiDBLite consensus disorder prediction 170 202 - -
Aip01g01127 280 SUPERFAMILY Homeodomain-like 2 67 IPR009057 -
Aip01g01127 280 Gene3D - 2 59 - -
Aip01g01127 280 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Aip01g01127 280 CDD SANT_TRF 6 57 - -
Aip01g01127 280 PANTHER MYB TRANSCRIPTION FACTOR 131 276 - -
Aip01g01127 280 SMART sant 4 59 IPR001005 -
Aip01g01127 280 Coils Coil 227 261 - -
Aip01g01127 280 PANTHER MYB TRANSCRIPTION FACTOR 1 126 - -
Aip01g01127 280 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g01127 Aip-Chr1 25499374 25502323 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g01127 1 275 Single Myb Histone (SMH) Gene Family AT5G67580 48.649 5.73e-58 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Aip01g01127 Myb_DNA-binding 5.4e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g01127 K09422 - gmx:778043 305.834
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g00554 05 6549792 6554432 Aip01g01127 01 25499374 25502323 PCT