Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g01122 ATGGATACGCTGTTTAGGCTAGATCCACCGTCCCTAAACTCCACAACAACATCATCAACCAACTCTCATCAAAATTATTATTATTATTATGACCAACACCAACTAGAGGAAGAAGCTGAAGAAGAATGCTTCAACTTTTTCATGGATGAAGAAGACCTATCCTCTTCTTCTTCAAAGCAACCAGAACAATATTACCCTTATTATAACCAATTACAACCCCACTACCATTTATTATCATCCACTACCACTACTCATCATGATTTATCGTCAACATCATTCTTACCACCCACTCCACCACCATCAGATTTCAACTTTGAATTCTCATCAGGCACGTGGGCACCCAACATCCTCCTCGACACCGCACGTGCCATCGCTGACAACAACACCACGCGACTGCATCAACTCCTATGGATGCTCAACGAGCTAAGCTCTCCATACGGCGACACAAACCAAAAACTCGCCGCGTATTTTCTTCAAGCCTTGTTCAGCCGCATAACCACCGTCGGCGAACGAACCTACCGAACCTTAACGTTAGCTTCGGACAAGACTTGCTGTTTCGAGTCCACCAGGAAGACGGTTCTCAAGTTCCAGGAGGTTAGTCCCTGGACCACGTTTGGACACGTGGCGTCCAATGGCGCCATCTTAGAGGCTCTCGATGGGGAGCTCAACTTGCACATTGTGGATTTCAGCAACACGTACTGCACACAGTGGCCAACGCTTCTTGAAGCCTTGGCCACTCGTAGCGACGACACCCCGAACCTCCGGTTAACCACCGTCGTCACCACCAGACCTGGTGACTCTGGCGACGCTGTTCAGAGGGTCATGAAGGAAATAGGTACAAGGATGGAGAAATTTGCGAGGCTAATGGGAGTTCCGTTCAAATTCAACGTCGTTTGCCACGTCGGCGATCTCTCCAATCTCAACTTCGGCGATTTGGACATCAAGAACGAGGAGGCCTTAGCCATCAACTGCGTGAACACGCTGCACGCGATCACACCCGTCGGGAACCACCGTGACACGTTGATATCCTCGCTGGCGAGGCTAAACCCTCGGATCGTGACGGTGGTGGAAGAAGAAGCGGATCTGGACGTTGGCGCCGAAGGCCAGGAGTTCCTTACAGGGTTCGAGGAATGCGTGAAGTGGTTTAGGGTTTACATGGAGGCGCTGGATGAGAGCTTTACGAGGACGAGTGGGGAGAGGCTGATGCTGGAGAGGGCGGCGGGGAGGGCGATTGTGGACCTGGTGGCGTGTACGGCGGAGGAGTCGGTGGAGCGGAGGGAGACGGCGGTGAAATGGTCACAGAAAATGAGGGAAGGTGGGGGGTTGAATAGGATGCCGTTTAGCGAGGAGGTGTGTGATGACGTCAGAGCATTGTTGAGAAGGTATAGGGAAGGGTGGTCGATGGCACAGTGTTCCGATAACGGAGTATTTCTTTGTTGGAAGGACCAGCCGGTGGTGTGGGCCAGTGCATGGAAGCCGTAG 1482 0.5182 MDTLFRLDPPSLNSTTTSSTNSHQNYYYYYDQHQLEEEAEEECFNFFMDEEDLSSSSSKQPEQYYPYYNQLQPHYHLLSSTTTTHHDLSSTSFLPPTPPPSDFNFEFSSGTWAPNILLDTARAIADNNTTRLHQLLWMLNELSSPYGDTNQKLAAYFLQALFSRITTVGERTYRTLTLASDKTCCFESTRKTVLKFQEVSPWTTFGHVASNGAILEALDGELNLHIVDFSNTYCTQWPTLLEALATRSDDTPNLRLTTVVTTRPGDSGDAVQRVMKEIGTRMEKFARLMGVPFKFNVVCHVGDLSNLNFGDLDIKNEEALAINCVNTLHAITPVGNHRDTLISSLARLNPRIVTVVEEEADLDVGAEGQEFLTGFEECVKWFRVYMEALDESFTRTSGERLMLERAAGRAIVDLVACTAEESVERRETAVKWSQKMREGGGLNRMPFSEEVCDDVRALLRRYREGWSMAQCSDNGVFLCWKDQPVVWASAWKP 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g01122 493 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 1 492 IPR005202 -
Aip01g01122 493 ProSiteProfiles GRAS family profile. 104 492 IPR005202 -
Aip01g01122 493 Pfam GRAS domain family 116 492 IPR005202 -
Aip01g01122 493 PANTHER PROTEIN SHORT-ROOT 1 492 IPR030019 GO:0003700|GO:0005634|GO:0008356|GO:0009956|GO:0043565|GO:0048366
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g01122 Aip-Chr1 25300840 25302898 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g01122 26 493 GRAS Transcription Factor Family AT4G37650 60.040 0.0 560
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Aip01g01122 GRAS 4e-104 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g01122 - - gmx:100778524 667.151
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g01122 01 25300840 25302898 Aip01g01122 01 25300840 25302898 ECH
Aip05g00558 05 6582918 6585155 Aip01g01122 01 25300840 25302898 PCT