Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g01093 ATGACCAATGCTTTTGCACTCGCCGCCGCCGAAACCCTGGCACAAAAGATTGGCAAATCGACGCGCCGCCCCGGCGCGTCGTCCAAGGCAAGGGTTTACGCCGACGTCAACGTCGTTCGCCCTAAAGAATATTGGGACTACGAAACCCTCAACGTCCAGTGGGGGGAGCAAGATGATTATGAGGTGGTGAGGAAGGTGGGAAGAGGGAAATACAGTGAGGTGTTTGAGGGTGTTCACTGCACCGATAACGAAAAATGCGTCATAAAGATCCTGAAGCCTGTGAAGAAGAAGAAGATCAAGAGGGAAATCAAAATTTTACAGAATCTTTGTGGGGGGCCCAATATTGTAAAGTTGCTCGACATTGTTAGAGACCAGCAGTCAAAGACCCCAAGCCTTATATTTGAATATGTTAATAACACTGATTTTAAAGTGCTTTATCCCACATTGTCGGACTATGATATAAGATATTACATCTATGAACTTTTAAAGGCACTAGATTACTGCCACTCTCAAGGAATTATGCATCGGGATGTAAAGCCACATAATGTGATGATTGACCATGAGCAGCGAAAACTTCGGCTTATAGATTGGGGGCTTGCAGAGTTTTATCATCCTGGGAAAGAATATAATGTTCGCGTTGCGTCCAGATATTTCAAAGGCCCTGAGCTTCTTGTTGATCTTCAAGACTACGATTACTCTCTTGATTTATGGAGTCTTGGTTGTATGTTTGCTGGAATGATATTCCGGAAGGAGCCATTCTTTTATGGACATGATAACTACGATCAACTGGTCAAAATAGCCAAGGTACTCGGTACAGATGAATTAAGTGCATATTTAAATAAGTATCGCATAGAGTTGGACCCACATCTTGCAGCGCTTGTTGGGAGGCATAGCCGAAAGCCATGGACAAAGTTCATTAGTGTAGAAAATCAACACTTGGCTGTTCCTGAGGCTATTGACTTTGTGGACAAGCTACTACGGTATGATCACCAAGAACGTCCAACTGCAAAAGAAGCCATGGCCCATCCTTACTTCAACCCAGTCAGAAATGCCGAAAGTAGTAGAAATCGAACAGATTGA 1080 0.4389 MTNAFALAAAETLAQKIGKSTRRPGASSKARVYADVNVVRPKEYWDYETLNVQWGEQDDYEVVRKVGRGKYSEVFEGVHCTDNEKCVIKILKPVKKKKIKREIKILQNLCGGPNIVKLLDIVRDQQSKTPSLIFEYVNNTDFKVLYPTLSDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHEQRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDLWSLGCMFAGMIFRKEPFFYGHDNYDQLVKIAKVLGTDELSAYLNKYRIELDPHLAALVGRHSRKPWTKFISVENQHLAVPEAIDFVDKLLRYDHQERPTAKEAMAHPYFNPVRNAESSRNRTD 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g01093 359 Gene3D Transferase(Phosphotransferase) domain 1 137 345 - -
Aip01g01093 359 PANTHER BNAA04G13490D PROTEIN 9 351 - -
Aip01g01093 359 Pfam Protein kinase domain 60 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip01g01093 359 Gene3D Phosphorylase Kinase; domain 1 60 136 - -
Aip01g01093 359 SMART serkin_6 60 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip01g01093 359 ProSitePatterns Serine/Threonine protein kinases active-site signature. 173 185 IPR008271 GO:0004672|GO:0006468
Aip01g01093 359 MobiDBLite consensus disorder prediction 339 359 - -
Aip01g01093 359 SUPERFAMILY Protein kinase-like (PK-like) 31 349 IPR011009 -
Aip01g01093 359 CDD STKc_CK2_alpha 41 345 IPR045216 GO:0004674|GO:0006468
Aip01g01093 359 ProSitePatterns Protein kinases ATP-binding region signature. 66 89 IPR017441 GO:0005524
Aip01g01093 359 PANTHER CASEIN KINASE II SUBUNIT ALPHA 9 351 IPR045216 GO:0004674|GO:0006468
Aip01g01093 359 ProSiteProfiles Protein kinase domain profile. 60 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g01093 Aip-Chr1 24288457 24295862 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g01093 58 346 Core Cell Cycle Gene Families AT1G76540 31.310 1.82e-42 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CK2 Aip01g01093 Pkinase 2.2e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g01093 K03097 - egr:104418449 670.233
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g01093 01 24288457 24295862 Aip01g01093 01 24288457 24295862 ECH