Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g01087 ATGAGTTGCAACGGTTGCCGAGTTCTCCGAAAGGGTTGCAGCGAGACATGCATGTTGCGCCCTTGCTTGCAGTGGATCGAGACACCCGAGGCCCAAGGCCACGCCACCGTCTTCGTCGCCAAGTTCTTCGGCCGCGCCGGCCTCATGTCTTTCATTTCCAATGTACCGGAGGCCCAAAGACCCGCTCTGTTTCAGTCACTGCTGTTTGAAGCATGTGGAAGAACCGTGAATCCGGTTAATGGTGCTGTGGGGCTTTTGTGGACAGGGAACTGGCACGTGTGCCAGGCTGCAGTGGAGACGGTGCTCCGCGGAGGCACGTTGAGGCCCTCGCCGGAGTTTATGGGGATGGAATCGGCGGGTCCGGTGGTGGCCACCGACGAAGCATCGGAGGCAGAGGTCACGTGCGGTGACATATGGAAGAAGGTTCGAGATCCAAACCCGAGTTGCAGGTTCACAAGCTCACGGTCTACACGTGTTGCTGCCGGCGCCGCCGGGAAGCGTAAGCGGCTGGAGGAGGTGACGAGGGTCCAGACGGCGGCTGATCTTGATCTTCGTCTGACGCCGATCTTCCTTCAGAAGATCGCCGATTACCGGCGCCGTCCGGGATCGCCGTCGATGACGTCGGAGGAGTCCGTGACGACCACGGCGGAGATTGGAGGAGATCAGTGGGGTCACAGCGGTGAACGGAAAGTTCTCAACCTTTTCATTTGA 711 0.5963 MSCNGCRVLRKGCSETCMLRPCLQWIETPEAQGHATVFVAKFFGRAGLMSFISNVPEAQRPALFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGTLRPSPEFMGMESAGPVVATDEASEAEVTCGDIWKKVRDPNPSCRFTSSRSTRVAAGAAGKRKRLEEVTRVQTAADLDLRLTPIFLQKIADYRRRPGSPSMTSEESVTTTAEIGGDQWGHSGERKVLNLFI 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g01087 236 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1 236 - -
Aip01g01087 236 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
Aip01g01087 236 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 236 - -
Aip01g01087 236 Pfam Lateral organ boundaries (LOB) domain 2 101 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g01087 Aip-Chr1 23962272 23963729 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g01087 1 236 AS2 family AT4G37540 57.937 4.77e-89 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Aip01g01087 LOB 4.5e-26 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g00575 05 6886391 6887786 Aip01g01087 01 23962272 23963729 ECH
Aip07g03515 07 125195309 125196203 Aip01g01087 01 23962272 23963729 ECH
Aip01g01087 01 23962272 23963729 Aip01g01087 01 23962272 23963729 ECH
Aip01g01087 01 23962272 23963729 Aip05g00575 05 6886391 6887786 PCT