Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g01081 ATGCCCTCTGGCAGGTTGATGTGGCACTTTGATTTGAAGAAGTTCAGGACAAATGAAGTAAAGAGGGTCAAGATAAGTTTAGCTTGTGTTTTTGCCTTTATGGCGATTGGATGGCCGTTAATTATTTATAAGACAGAAAACATGCAATGGATTAAATTCTGGTTCATGCCATGGCTGGGCCTTTTCCTAACATATCTTGGGCTATACTTGATGAAAGGTCATAGACAACCAGCACTTCTCTACCTTGTTCCATGTACCTTAGGTAACAAAAAAAGTGTAGTTCCCTTTCCACTTGATCTATACCACTTGATCAAGAAGGCTGTCTCAATTAGGAAGCACTTGGAGAGGAATAGGAAGGACAAGGACTCCAAATTCAGGTTGATTTTGGTAGAGAGCAGGATCCACCGCCTTGCATGTTACTACAAGAAGACCAAGAAGCTTCCACCCAGAGTAGAAAAGGTGGTGGGGATTGGCTTTCAACTTGGACTAGACCCAGGAAAGTTTGGGTGTTTGAGCTGTGTTTGTAACATCCCAAAATTGGGAGAAGAAGGACAAGCTGAGAAAGGAGCCAAGGAAGGAGGATCTAAGGTTCTCGGCCAAGTTTTGCTGCAAACTAGCCACATTCTCCCTTAA 633 0.4313 MPSGRLMWHFDLKKFRTNEVKRVKISLACVFAFMAIGWPLIIYKTENMQWIKFWFMPWLGLFLTYLGLYLMKGHRQPALLYLVPCTLGNKKSVVPFPLDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLACYYKKTKKLPPRVEKVVGIGFQLGLDPGKFGCLSCVCNIPKLGEEGQAEKGAKEGGSKVLGQVLLQTSHILP 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g01081 210 PANTHER RIBOSOMAL PROTEIN S15P/S13E 96 150 IPR023029 -
Aip01g01081 210 Pfam Ribosomal protein S15 97 146 IPR000589 GO:0003735|GO:0005840|GO:0006412
Aip01g01081 210 ProSitePatterns Ribosomal protein S15 signature. 110 140 IPR000589 GO:0003735|GO:0005840|GO:0006412
Aip01g01081 210 PANTHER 40S RIBOSOMAL PROTEIN S13 96 150 - -
Aip01g01081 210 SUPERFAMILY S15/NS1 RNA-binding domain 96 150 IPR009068 -
Aip01g01081 210 SMART Ribosomal_S15_2 90 164 IPR000589 GO:0003735|GO:0005840|GO:0006412
Aip01g01081 210 Gene3D - 95 153 - -
Aip01g01081 210 CDD Ribosomal_S15p_S13e 97 150 IPR000589 GO:0003735|GO:0005840|GO:0006412
Aip01g01081 210 Pfam Signal peptide peptidase 59 93 IPR007369 GO:0004190|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g01081 Aip-Chr1 23544755 23546382 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g01081 96 149 Cytoplasmic Ribosomal Protein Gene Family AT4G00100 92.593 1.96e-28 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g01081 K02953 K10255 aip:107641937 167.933