Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g01080 ATGTTCCGTTACGACCTCCTCGACGAGACGCAGAACAAGCTCGATTACATCCTCTCTCTCACCGTCAAGAACTTGCTCGAGCGCTGCCTCCATATTCTCGTCTTCAAGTCTGATGCTCCCGGAGCACCTAGGCAGTGGTGGTTTGGCGGGGGGACTGACTTGACTCCTTCTTACATTTTCGAGGAGGATGTTAAACATTTCCATTTGGTTAAACTTAAAGAACTTGAAGCTAATCTGCTTGAGAATAAGGCAAATAATTAG 261 0.4674 MFRYDLLDETQNKLDYILSLTVKNLLERCLHILVFKSDAPGAPRQWWFGGGTDLTPSYIFEEDVKHFHLVKLKELEANLLENKANN 86
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g01080 86 Pfam Coproporphyrinogen III oxidase 36 70 IPR001260 GO:0004109|GO:0006779
Aip01g01080 86 Gene3D Coproporphyrinogen III oxidase, aerobic 28 79 IPR036406 GO:0004109|GO:0006779
Aip01g01080 86 SUPERFAMILY Coproporphyrinogen III oxidase 36 70 IPR036406 GO:0004109|GO:0006779
Aip01g01080 86 PANTHER - 37 72 - -
Aip01g01080 86 PANTHER COPROPORPHYRINOGEN III OXIDASE, MITOCHONDRIAL 37 72 IPR001260 GO:0004109|GO:0006779
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g01080 Aip-Chr1 23536319 23537183 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g01080 1 37 Cytoplasmic Ribosomal Protein Gene Family AT5G39850 72.973 4.38e-12 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g01080 K00228 - adu:107465882 111.694