Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g01074 ATGTGCAAAAAAAGTCACTACACACGCATCAAATATGCGCACGAACCACCATCACTACTCTTCCGCTTGTTGCTAGTGTGCGCACTTGTTGCCTTGCGTGCGCCGGTAGCGCAATACCCTACCCTACGCACCCCCACCACGCACCTCACTAACGACACCACCACCATCCTCCACCACCACCATCACCCTTACATAAATCGCAGCAGAGCTCAGATCTCGCGTTCTTCCAATCGCTCACGCATGTCGAAGGCGCGTGTCTACACCGACGTCAACGTTCTCCGCCCCAAAGAGTACTGGGACTATGAGTCCCTCAACGTTCAGTGGGGTGATCAAGATGATTATGAGGTTGTAAGAAAAGTGGGAAGGGGGAAGTATAGTGAGGTTTTTGAAGGCATAAATGTTAACAGCAATGAGCGGTGTATAATCAAGATCCTCAAGCCTGTCAAGAAGAAGAAGATTAAGAGAGAGATAAAAATACTTCAGAACCTCTGTGGGGGCCCAAATATTGTCAAGCTTCTTGATATTGTTAGAGATCAACACTCTAAAACTCCTAGCTTAATATTTGAGTATGTCAACAGTACAGATTTTAAAGTTTTGTATCCAACCTTGACTGATTATGACATACGCTATTACATATATGAGCTTCTTAAGGCCTTGGACTACTGTCATTCACAAGGCATAATGCATAGAGACGTGAAGCCTCATAATGTTATGATAGATCATGAATTACGAAAACTTCGATTGATAGATTGGGGTCTTGCTGAATTTTATCATCCTGGAAAGGAGTATAATGTTCGTGTGGCATCAAGATACTTTAAGGGCCCTGAACTTCTAGTTGATTTACAAGACTATGACTACTCATTAGACATGTGGAGCCTTGGCTGCATGTTTGCTGGAATGATATTTCGGAAGGAGCCTTTCTTTTATGGTCATGACAATCATGATCAGCTTGTCAAAATAGCCAAGGTACTTGGGACTGATGAATTGAATGCATACCTGAATAAGTATCACCTGGAGCTTGATCCTCAACTTGATGCACTTGTTGGAAGGCACAGTCGCAAACCCTGGTCAAAATTCATCAATGCAGATAACCAGCATCTTGTGTCTCCAGAGGCTATTGATTTCCTTGATAAGCTCCTTCGGTATGATCACCAGGACAGGCTAACGGCAAGAGAAGCAATGGCACATCCATATTTCTCTCAGGTAAGAGCTGCAGAAAGTAGCAGAATGCGGACACAGTAA 1242 0.438 MCKKSHYTRIKYAHEPPSLLFRLLLVCALVALRAPVAQYPTLRTPTTHLTNDTTTILHHHHHPYINRSRAQISRSSNRSRMSKARVYTDVNVLRPKEYWDYESLNVQWGDQDDYEVVRKVGRGKYSEVFEGINVNSNERCIIKILKPVKKKKIKREIKILQNLCGGPNIVKLLDIVRDQHSKTPSLIFEYVNSTDFKVLYPTLTDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNHDQLVKIAKVLGTDELNAYLNKYHLELDPQLDALVGRHSRKPWSKFINADNQHLVSPEAIDFLDKLLRYDHQDRLTAREAMAHPYFSQVRAAESSRMRTQ 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g01074 413 ProSiteProfiles Protein kinase domain profile. 114 399 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip01g01074 413 CDD STKc_CK2_alpha 95 399 IPR045216 GO:0004674|GO:0006468
Aip01g01074 413 Pfam Protein kinase domain 114 399 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip01g01074 413 PANTHER CASEIN KINASE II SUBUNIT ALPHA-3 18 413 - -
Aip01g01074 413 Gene3D Phosphorylase Kinase; domain 1 114 190 - -
Aip01g01074 413 SUPERFAMILY Protein kinase-like (PK-like) 83 403 IPR011009 -
Aip01g01074 413 Gene3D Transferase(Phosphotransferase) domain 1 191 399 - -
Aip01g01074 413 ProSitePatterns Serine/Threonine protein kinases active-site signature. 227 239 IPR008271 GO:0004672|GO:0006468
Aip01g01074 413 ProSitePatterns Protein kinases ATP-binding region signature. 120 143 IPR017441 GO:0005524
Aip01g01074 413 PANTHER CASEIN KINASE II SUBUNIT ALPHA 18 413 IPR045216 GO:0004674|GO:0006468
Aip01g01074 413 SMART serkin_6 114 399 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g01074 Aip-Chr1 23356032 23360612 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g01074 112 399 Core Cell Cycle Gene Families AT1G76540 29.450 1.70e-42 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CK2 Aip01g01074 Pkinase 1.4e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g01074 K03097 - gmx:100819679 704.901
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g01074 01 23356032 23360612 Aip01g01074 01 23356032 23360612 ECH
Aip05g00579 05 7058545 7067062 Aip01g01074 01 23356032 23360612 PCT