Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g01000 ATGGCCGTTGAGCTCATGATGGGTGGTTACAGGAACGACAACAGCAGCAGCGGCGGCTTCGCCACTTCCAAAGCTGAAGAGAACGCCGTCCAAGAAGCGGCGTCTGGGTTAGAGAGCGTTGAGAAGCTCATAAGGCTTCTCTCTCAGACTCAGCACCAACACTTTAACGCTTCTTCTTCTTCTTCTGCCGTTAACTCCGACGCTACTTTATCAATCGAGAGAGATTGCAAGGCCGTTGCTGACGTCGCCGTTTCGAAGTTCAAGAGAGTTATCTCTCTCCTTGGCCGAACCAGAACCGGCCACGCGCGTTTCAGAAGAGGACCTCTTCACGCGCCTTTCCAATCGCAGACTGAACCGTTTTCTCAAGAACACAGGGTCTTCCATGCGACGCCTCTGCAGCAGATCCCACCCCCTCCACCGCCACCTCCACCACCACCGCCACCACAACTACAACCACAACTACAGAGCCTCGTTAACCACCACCTGATTCCCAAAAACGGCGTCCTTGAAAGGTCGTCTTCGTCTAAGACTATCAACTTTTCGTACTCCTCTGCTGCTAACTCGTTCTTATCGTCTCTCACCGGCGACGCCGCCGCCGGTGAATCCAAGCAGCAGCACCACCAGCAACAGCCGTCGTTGTCGTCGCCGGCACCGGCGTTTCAGATCACGAACCTGTCGCAGGTTTCGTCTGCGGGGAAGCCACCTCTGTCGTCGTCTTCGCTGAAGAGGAAGTGCAGCTCGGAGAATTTGGGTTCGGGAAAGTGTGGAAGCTCCTCTAGCCGCTGCCATTGCTCCAAAAAGAGCCGGAAAATGAGGTTGAAGAGGGTGGTGAGGGTGCCGGCGATAAGCTTGAAGATGGCGGATATTCCGCCGGATGATTACTCTTGGAGAAAATATGGTCAGAAACCTATTAAAGGATCCCCTCATCCAAGGGGGTACTACAAGTGCAGCAGTGTAAGAGGGTGTCCAGCAAGGAAGCATGTAGAGAGGGCTTTGGATGATCCATCTATGCTGGTAGTCACATATGAAGGAGAACATAACCACTCTCTCACTGCAGCTGATGCTACTAATCTCATCCTAGAATCCTCTTGA 1092 0.533 MAVELMMGGYRNDNSSSGGFATSKAEENAVQEAASGLESVEKLIRLLSQTQHQHFNASSSSSAVNSDATLSIERDCKAVADVAVSKFKRVISLLGRTRTGHARFRRGPLHAPFQSQTEPFSQEHRVFHATPLQQIPPPPPPPPPPPPPQLQPQLQSLVNHHLIPKNGVLERSSSSKTINFSYSSAANSFLSSLTGDAAAGESKQQHHQQQPSLSSPAPAFQITNLSQVSSAGKPPLSSSSLKRKCSSENLGSGKCGSSSSRCHCSKKSRKMRLKRVVRVPAISLKMADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPSMLVVTYEGEHNHSLTAADATNLILESS 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g01000 363 SUPERFAMILY WRKY DNA-binding domain 287 350 IPR036576 GO:0003700|GO:0006355|GO:0043565
Aip01g01000 363 SMART WRKY_cls 290 350 IPR003657 GO:0003700|GO:0006355|GO:0043565
Aip01g01000 363 Gene3D WRKY domain 277 351 IPR036576 GO:0003700|GO:0006355|GO:0043565
Aip01g01000 363 Pfam Plant zinc cluster domain 242 288 IPR018872 -
Aip01g01000 363 MobiDBLite consensus disorder prediction 197 262 - -
Aip01g01000 363 Pfam WRKY DNA -binding domain 292 348 IPR003657 GO:0003700|GO:0006355|GO:0043565
Aip01g01000 363 ProSiteProfiles WRKY domain profile. 285 351 IPR003657 GO:0003700|GO:0006355|GO:0043565
Aip01g01000 363 MobiDBLite consensus disorder prediction 197 263 - -
Aip01g01000 363 MobiDBLite consensus disorder prediction 132 152 - -
Aip01g01000 363 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 21 363 IPR044810 GO:0003700
Aip01g01000 363 MobiDBLite consensus disorder prediction 131 152 - -
Aip01g01000 363 PANTHER WRKY TRANSCRIPTION FACTOR 7-RELATED 21 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g01000 Aip-Chr1 20165787 20167859 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g01000 26 348 WRKY Transcription Factor Family AT2G24570 44.444 6.58e-73 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Aip01g01000 WRKY 3.6e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g01000 - - qsu:112030051 404.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g01000 01 20165787 20167859 Aip01g01000 01 20165787 20167859 ECH