Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g00991 ATGGTTATGGCCTCCAACATCAGAACATTACTAAATCAAGATATAGTGGTGGTGTTGACGCATTCGACGTCATACACCCTTTCACATTTGTTATGTAACACCTTCTTTAAGCCAGATCTCAGTGAAAATTTGGGGTTGCAGGATGAAACTCGTGATGAACTTGGTGCAGAGTTCCACAAGAAGTTGGATTTGAAGGATGAGGATGAAAGGGTAGCTGAAAATGAGAAGAAAGATTCGGATTTTGTAGCTGGTAGTGGAGAATATGGTGGTGAGAAATTGGGTGGTGAAGGTGGTTGTGCCCCGAAAATAGGTGAAGCACAAGGGAGTGATGATAATGATGGTTGGGATGATGATGAGGGTTATGGCTGGAATAAGAATGTGAAAGAGAGTGAGGTTGATAAGGTAAGTGGAGATTTTGATGTTGATGGTGATGGTAATGGTGATGATGAAGTTGAAGTTGAAGGTGATGAAGAAGTGGAGAAGAAGAAAGATAGAAGCAGTGGTAGAGTTCAACAGCAATATCCACTAAGGCCTGATGCTGAAGATTGTGCTTTCTATCTTAAAACTGGAACTTGCAAATTTGGATTCAATTGCAAGTTTAATCACCCACTTAGTAGGAGGAAGAACCAGGTATTAATTATTCTTTTGTTCCTATTATCAATCTAG 666 0.4009 MVMASNIRTLLNQDIVVVLTHSTSYTLSHLLCNTFFKPDLSENLGLQDETRDELGAEFHKKLDLKDEDERVAENEKKDSDFVAGSGEYGGEKLGGEGGCAPKIGEAQGSDDNDGWDDDEGYGWNKNVKESEVDKVSGDFDVDGDGNGDDEVEVEGDEEVEKKKDRSSGRVQQQYPLRPDAEDCAFYLKTGTCKFGFNCKFNHPLSRRKNQVLIILLFLLSI 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g00991 221 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 51 211 - -
Aip01g00991 221 ProSiteProfiles Zinc finger C3H1-type profile. 177 205 IPR000571 GO:0046872
Aip01g00991 221 MobiDBLite consensus disorder prediction 69 174 - -
Aip01g00991 221 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 181 203 IPR000571 GO:0046872
Aip01g00991 221 SMART c3hfinal6 177 204 IPR000571 GO:0046872
Aip01g00991 221 Gene3D - 150 211 - -
Aip01g00991 221 MobiDBLite consensus disorder prediction 118 141 - -
Aip01g00991 221 SUPERFAMILY CCCH zinc finger 177 206 IPR036855 GO:0046872
Aip01g00991 221 PANTHER PROTEIN PHOSPHATASE RELATED 51 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g00991 Aip-Chr1 19775169 19776307 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g00991 174 206 C2H2 Transcription Factor Family AT1G29570 54.545 7.12e-10 55.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Aip01g00991 zf-CCCH 2e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g00991 - - adu:110280340 261.151