Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g00986 ATGTTGCCTTTTCATAAGAGAAAAGGATACACAATTGTGGCATCATTTAAAAAGTGTAGCCTTAGAGAAACCTTTCGTGCCCTCACCTCTCACCTTCGCCACTCACCGTCCCCACTCACCACTCACCACTCACGACTTCGCCACTCATGGTCAGCTGCGCCCTCCTGCATTGATCGTCAGCTGCGCCCTCCTGAATTGATCGTTAGCTGCGCCCTCACCATCGTCGTCTCTGCCCTCAGCTCATCCTCTCTGCGCTCAGCTCGTCTCTCTGCGCTCACATCGTCGAGAAGGCAGTCAAATAATGCACACTTAGGAAATAGTTTCTTTTTGAATCCTTCTTCACGGGGCATCTACCTGAGGGAGGCTACTGCTTTCCAACAATCTACTGAGCTAGGTCTCAGCTTGGACCAAGGGAAAGGAGCCGATGGAGCAGCAGCACCAGGAGTAGGCTTCTTGAAGCCACCGGAAGAGGCCTCCGGTAGCGGCAAGCGCTTTCGCGACGACGTCCTTGATGCCAGAGCTAAGAATGTTTTTCATGGCCAACCAATGCCTACTACTATTCCGGCAGCTCCACATCCTCCAACAATGCGTCCTAGGGTGCGGGCTAGAAGAGGACAGGCTACAGACCCACACAGCATAGCTGAACGGTTGCGCAAAGAAAGAATAGCAGAAAGAATCAGGGCTCTACAAGAACTGGTTCCAAGTGTCAACAAGGAACAAGCTTTTGCCTTCTTCGATTCCGCCTGCTCTGCTCTTCTGCCCTGTGCTATCCAGTTCTGCCCTAATTTTCACCTTCTTCTAGAGCCAGTAGAAGGGGCGCCCTCTCCCTCTATTGAGATCTCTGAAACCTTTCTGGATGAGCATTTGTTCGCCATTCAGGAAACACCATGGTTTGCAGACATTGCAAACTATAAAGCTGCAAGGTTCATACCCAAGGCATACAGCATGCAACAAAAGAAAAAATTAATTTCTGATGCAAAGTACTACTTGTGGGATGAACCCTATCTCTTTAAGAGATGTGCAGACGGAATAATCCGTAGGTGTGTGCCTAGAGAAGAAGCACAGAGCATCTTATGGCATTTCCATGTGTCACAATATGGAGGTCATTTCGGAGGTGAGCGAACAGCCACCAAGAGAGCTGGTAATTTGCCTCATAGTTACGCCATGCCTCAACAAGGAATCTTGGAGATTGAGTTGTTTGATGTATGGGGAATTGATTTCATGGGGCCTTTCCCACCATCATACTCAAACACTTATATTCTGGTGGCAGTTGACTATGTATCAAAATGGGTAGAGGCCATTGCCACACCCACCAATGATACTAAAACAGTGCTGAAGTTCCTCCAGAAACATATATTCAGCAGGTTTGGTGTTCCTAGGGTACTAATCAGTGATGGGGGCACTCACTTCTACAACAAACAGCTTTACTCTGCCATGGTCCGGTATGGAATTCGCCACAAGGTGGCAACTCCATATCATCCACAGACAAATGGGCAAGCTGAAGTTTCTAACAGAGAACTGAAAAGAATCCTGGAACGGACTGCTTGTCACCTGCCCGTGGAACTGGAACATAAGGCCTACTGGGAAACCAGATTCCTAAACTTTGATGCCAAATTAGCTGGAGAAAAAAGATTGCTTCAGCTGAATGAGCTAGAGGAATTCAGATTCACTGCTTTCGAAAATGCCAAGCTTTATAAAGAGAAATCTAAAAGGTGGCATGACAGAAAGCTGTCATCTAGAATCTTTGAACCAGGACAAAAGGTTCTGTTGTTTAACTCTAGGCTCAGGCTATTCCCAAGAAAACTGAAATCCCGGTGGAGGGGACCATATATACTTACAAGTGTATCACCATATGGTTATGTGGAGCTTCAAGACATTGATTCTGATAAGAAGTTCATTGTTAATGGACAGAGAATCAAGCACTATCTTGAAGGCAATGTTGAGAAAGAGTGCTCAAGGCTGAAGCTAGATTAA 1974 0.4666 MLPFHKRKGYTIVASFKKCSLRETFRALTSHLRHSPSPLTTHHSRLRHSWSAAPSCIDRQLRPPELIVSCALTIVVSALSSSSLRSARLSALTSSRRQSNNAHLGNSFFLNPSSRGIYLREATAFQQSTELGLSLDQGKGADGAAAPGVGFLKPPEEASGSGKRFRDDVLDARAKNVFHGQPMPTTIPAAPHPPTMRPRVRARRGQATDPHSIAERLRKERIAERIRALQELVPSVNKEQAFAFFDSACSALLPCAIQFCPNFHLLLEPVEGAPSPSIEISETFLDEHLFAIQETPWFADIANYKAARFIPKAYSMQQKKKLISDAKYYLWDEPYLFKRCADGIIRRCVPREEAQSILWHFHVSQYGGHFGGERTATKRAGNLPHSYAMPQQGILEIELFDVWGIDFMGPFPPSYSNTYILVAVDYVSKWVEAIATPTNDTKTVLKFLQKHIFSRFGVPRVLISDGGTHFYNKQLYSAMVRYGIRHKVATPYHPQTNGQAEVSNRELKRILERTACHLPVELEHKAYWETRFLNFDAKLAGEKRLLQLNELEEFRFTAFENAKLYKEKSKRWHDRKLSSRIFEPGQKVLLFNSRLRLFPRKLKSRWRGPYILTSVSPYGYVELQDIDSDKKFIVNGQRIKHYLEGNVEKECSRLKLD 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g00986 657 Pfam Integrase core domain 401 494 IPR001584 GO:0015074
Aip01g00986 657 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 204 239 IPR036638 GO:0046983
Aip01g00986 657 PANTHER TRANSPOSON TY3-I GAG-POL POLYPROTEIN 277 378 - -
Aip01g00986 657 PANTHER TRANSPOSON TY3-I GAG-POL POLYPROTEIN 379 516 - -
Aip01g00986 657 ProSiteProfiles Integrase catalytic domain profile. 386 558 IPR001584 GO:0015074
Aip01g00986 657 PANTHER REVERSE TRANSCRIPTASE DOMAIN, RIBONUCLEASE H-LIKE DOMAIN PROTEIN-RELATED 379 516 - -
Aip01g00986 657 PANTHER REVERSE TRANSCRIPTASE DOMAIN, RIBONUCLEASE H-LIKE DOMAIN PROTEIN-RELATED 277 378 - -
Aip01g00986 657 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 206 263 IPR011598 GO:0046983
Aip01g00986 657 SUPERFAMILY Ribonuclease H-like 399 519 IPR012337 -
Aip01g00986 657 MobiDBLite consensus disorder prediction 180 210 - -
Aip01g00986 657 Gene3D - 199 247 IPR036638 GO:0046983
Aip01g00986 657 Gene3D - 313 383 - -
Aip01g00986 657 Gene3D - 397 542 IPR036397 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g00986 Aip-Chr1 19445383 19453516 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g00986 131 246 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G02590 68.333 2.60e-32 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g00986 - - adu:110275703 517.694