Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g00983 ATGAGCAATCTGACTAAGGAAGAGTTTGTGCACGTTCTTCGCCGACAAAGCACTGGGTTTCCAAGAGGAAGCTCTAAATATAGAGGTGTAACTTTGCACAAATGTGGAAGATGGGAAGCTCGAATGGGACAATTTTTAGGGAAAAAGTACGTCTATCTGGGTTTGTTTGACACCGAGATTGAAGCTGCAAGGGCCTATGATAAAGCAGCAATAAAATGCAACGGCAAAGAGGCCGTCACCAATTTTGATCCCAGCATCTATGAAAATGAGCTTAATTCCGTAGAACCCACAGGTAATGCTGCAGATCACAATCTAGATTTAAGTTTGGGCAATTCAAGTTTCAAATCTAGCAACAATAGTCGAGCATTGGGGAATCACACCACAAATGTTCAAGATCATCCCCAGCAGCTCATGCCATCTGAATCCAATTGGCGAAATGGTGCAAGCAAGCCTAAGCTGGTGAATATCCTACCAAAACCGTGCAATAGAAACATGGAAGCACATGGAGGAAGGGATTTGCACGGAGAGAGTGAAGCCTTGAGGATGCTGAGTCAAACCCACATCCATTCTACTACTTGTTCAGCATCTAATGAAACGCAAAGATATGGACCCTACAGGTCCCCAGGGGAGCCTCAAATGCTTCACAATTTTGCACATCTTCAACCACCAAATTTTTATTTCTCCAGCAGCAGTAGTAATGGAGGTCGCATTGGGAATGATCTTTCATTATCAATGGCGGATCATCATCAACAACAGTTGCAACCAGGACCTCCACACCATTATTTGGCCACTGCTGCAGCATCATCAGGATTCCCACCACAGATTAGTAGACCCTCTTCTCATCACCAAGGTTGGCTGCAGAAAAATGGCTTCCACACAATTATGAGACCCTCCTAA 897 0.4437 MSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYENELNSVEPTGNAADHNLDLSLGNSSFKSSNNSRALGNHTTNVQDHPQQLMPSESNWRNGASKPKLVNILPKPCNRNMEAHGGRDLHGESEALRMLSQTHIHSTTCSASNETQRYGPYRSPGEPQMLHNFAHLQPPNFYFSSSSSNGGRIGNDLSLSMADHHQQQLQPGPPHHYLATAAASSGFPPQISRPSSHHQGWLQKNGFHTIMRPS 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g00983 298 Pfam AP2 domain 25 74 IPR001471 GO:0003700|GO:0006355
Aip01g00983 298 MobiDBLite consensus disorder prediction 110 148 - -
Aip01g00983 298 ProSiteProfiles AP2/ERF domain profile. 26 83 IPR001471 GO:0003700|GO:0006355
Aip01g00983 298 CDD AP2 25 85 IPR001471 GO:0003700|GO:0006355
Aip01g00983 298 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 296 - -
Aip01g00983 298 PANTHER AP2 DOMAIN TRANSCRIPTION FACTOR 1 296 - -
Aip01g00983 298 PRINTS Ethylene responsive element binding protein signature 27 38 IPR001471 GO:0003700|GO:0006355
Aip01g00983 298 PRINTS Ethylene responsive element binding protein signature 65 85 IPR001471 GO:0003700|GO:0006355
Aip01g00983 298 SUPERFAMILY DNA-binding domain 25 85 IPR016177 GO:0003677
Aip01g00983 298 Gene3D AP2/ERF domain 25 84 IPR036955 GO:0003700|GO:0006355
Aip01g00983 298 SMART rav1_2 26 89 IPR001471 GO:0003700|GO:0006355
Aip01g00983 298 MobiDBLite consensus disorder prediction 270 298 - -
Aip01g00983 298 MobiDBLite consensus disorder prediction 270 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g00983 Aip-Chr1 19219352 19221985 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g00983 26 94 AP2-EREBP Transcription Factor Family AT4G36920 50.000 3.78e-06 46.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Aip01g00983 AP2 1.6e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g00983 K09284 - gmx:100792442 416.387
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g00983 01 19219352 19221985 Aip01g00983 01 19219352 19221985 ECH
Aip05g00624 05 7675745 7678896 Aip01g00983 01 19219352 19221985 PCT