Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g00968 atgagccctaatccttccacagaTCAGCCACCTCCAACCCCAACCACCTCCTGTGCCCCTGACTCCCTCTTCCACCACCACCTACGCTGCCCCTCCTCTCCTTGCCTCATCCCCCTCTCTCTCCAGCTCTGCCCTTTTCTTCTTCCTTCGTCCTTTTTCCCTTCCATTCTTCTTCCTCGGCCCCTGCCTCCATCACCGCCGCACAGCCGCGCCTCCGTCAGCCACCATCAACGTCGGCAACCTCCCCCTTCCTTTCGCACCGGCACCGCTTCCAGCAATGACCCATCCGGTGAGGCGGATCCAAATTCCTGCGGCGGAGACACTGTCACCGGCCAAAATTGCAAGTTCTGTCTGCCGCCACTTATGCCGCGATCGCAGCAGAGTTCCAAGTTCCGGTCGAGCCTGCCGCCCCTCCAACTGCTTTCGATAGCCCAGCGGAGCCTCGATGAGTGGCCGCAGGCGAGCTCAGATGACATTGGGGAGTGGTTGCCCCCACAGCCGCCGTTGACCTCCGGTGGCGGCATGAGAGGTAACCCTGGTGAAAGGTTGAAACTTGATCTCTCCTCAATTCAGATGAACAATGATCGGAATTGCAATAATGGCAGTAATAGTAGTGGTAATAATAATAGTTATAACAATAATGGTGTTAGTGGACTCTTGAAGAGGGATAGAATTGCATTTTTTGATAAGGAGTGTTCAAAGGTTGCTGAACATGTTTACCTTGGTGGTGATGCTGTTGCTAAGAATAGGGATATATTGAAACAGAATGGGATCACTCATATCTTGAACTGTGTTAGTTTTGTGTGCCCCGAGTATTTTAAGGCTGATTTTGTGTATAGAACATTGTGGCTTCAGGATAGTCCTTCAGAGGATATTACTAGTATCTTGTATGATGTGTTTGATTACTTTGAGGATGTTAGGGAACAAGGTGGTAGGGTGTTTGTGCACTGTTGTCAAGGTGTGTCTAGGTCTACTTTGTTGGTGATTGCATACCTCATGTGGAGGGAAGGACAGAGCTTTGATGATGCTTTTCAGTTGGTGAAGGCTGCAAGGGGTATTGCCGATCCGAATATGGGGTTTGCTTGCCAGTTGTTGCAGTGCCAGAAGGGAATGAGAAAGGGAAGAAGACGCGAAAAGAGAGGAAAGAGGAGGTCGCCGGCGTTGATGGTGGCTGACAGAGGCGCCGCTGTGCGGTGA 1197 0.5038 MSPNPSTDQPPPTPTTSCAPDSLFHHHLRCPSSPCLIPLSLQLCPFLLPSSFFPSILLPRPLPPSPPHSRASVSHHQRRQPPPSFRTGTASSNDPSGEADPNSCGGDTVTGQNCKFCLPPLMPRSQQSSKFRSSLPPLQLLSIAQRSLDEWPQASSDDIGEWLPPQPPLTSGGGMRGNPGERLKLDLSSIQMNNDRNCNNGSNSSGNNNSYNNNGVSGLLKRDRIAFFDKECSKVAEHVYLGGDAVAKNRDILKQNGITHILNCVSFVCPEYFKADFVYRTLWLQDSPSEDITSILYDVFDYFEDVREQGGRVFVHCCQGVSRSTLLVIAYLMWREGQSFDDAFQLVKAARGIADPNMGFACQLLQCQKGMRKGRRREKRGKRRSPALMVADRGAAVR 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g00968 398 ProSitePatterns Tyrosine specific protein phosphatases active site. 315 325 IPR016130 GO:0016311|GO:0016791
Aip01g00968 398 SMART dsp_5 231 370 IPR020422 GO:0006470|GO:0008138
Aip01g00968 398 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 221 372 IPR029021 -
Aip01g00968 398 MobiDBLite consensus disorder prediction 76 105 - -
Aip01g00968 398 PANTHER PROTEIN-TYROSINE-PHOSPHATASE MKP1 100 370 - -
Aip01g00968 398 MobiDBLite consensus disorder prediction 64 105 - -
Aip01g00968 398 MobiDBLite consensus disorder prediction 151 182 - -
Aip01g00968 398 Gene3D Protein tyrosine phosphatase superfamily 204 372 IPR029021 -
Aip01g00968 398 Pfam Dual specificity phosphatase, catalytic domain 239 368 IPR000340 GO:0008138|GO:0016311
Aip01g00968 398 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 290 351 IPR000387 GO:0016311|GO:0016791
Aip01g00968 398 CDD DSP 232 366 - -
Aip01g00968 398 ProSiteProfiles Dual specificity protein phosphatase domain profile. 231 373 IPR020422 GO:0006470|GO:0008138
Aip01g00968 398 PANTHER MKPA PROTEIN 100 370 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g00968 Aip-Chr1 18686182 18687378 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g00968 120 267 Protein tyrosine phosphatase (PTP) family AT3G55270 57.047 3.13e-42 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g00968 - - aip:107613560 592.808