Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g00948 ATGGACGTTGACATGGTCTCAACTACAATGATGATGCAACTAGAACGGTTACCTGAATTCTCCGAATCTTTTTACACCTCAATTCCCAATCAAGGAAGCGACTTCTCCGGTGGCCAAACCCTATTCACCGCACCACCAGCACCGCCGTGTTTGATTGATCCACCGCCGTCCAACAACGTCAACTTCCCCATCCAACACCAACCGATTGCATTCAGGAACCCTTACCATTGTTCTTCCTCATCGTCGGCGGAGAAGAAGAGTTCAATGGCGGCAATGAGGGAAATGATATTCCGAATAGCGGTTATGCAGCCGGTCCACATAGACCCGGAATCCGTAAAGGCGCCGAAGCGGAGGAACGTGAAGATCTCGAAGGATCCGCAGAGCGTGGCGGCGAGGCACCGGAGAGAAAGGATAAGCGAGAAGATAAGGATCTTGCAGCGGTTGGTGCCAGGTGGCACCAAAATGGACACTGCTTCCATGTTGGATGAAGCTGTGCACTATGTCAAGTTCTTGAAGAAGCAGGTGCAGACGCTGGAACAAGCAGAAGCAAGTAGAATAACAAGAACCCTTGGTGTTGGGTTTTCTTCTTCTAATAACAATGGCAATCATGTGAATTACGATGCTTTTTCTTTCAAGGGTAGTAGTAGTAGTTGCCAACAACTTTGTCATAATATTTTCTTCTCATCTCTTAGAAGTATCATCGTTGTTGCCGTACCCAGTACCCAAGAACACCATCGAAGAATCAAACTTGAAGTTGCTGTCTTGCCGTCGCCGCCGCCAAGACCACCACAACTTCGTAGTCGTACCCACCGTCGTTGTCTTCTATCACTTTCTGACTCACGACGCCTCATTTTTCAGCCTTATCCACTCACTTTCTACATTCTCCCTCACTCCCTCACTCAAACACTCATCGCAGTAGTCATGAAACAACGACAGTCAACAAAGATCATCACTCCCCTCGCTGGCTCCCTTGCCTCGTCCCACCGCCATCAGTCTCTGCTTTCTTAG 1008 0.4871 MDVDMVSTTMMMQLERLPEFSESFYTSIPNQGSDFSGGQTLFTAPPAPPCLIDPPPSNNVNFPIQHQPIAFRNPYHCSSSSSAEKKSSMAAMREMIFRIAVMQPVHIDPESVKAPKRRNVKISKDPQSVAARHRRERISEKIRILQRLVPGGTKMDTASMLDEAVHYVKFLKKQVQTLEQAEASRITRTLGVGFSSSNNNGNHVNYDAFSFKGSSSSCQQLCHNIFFSSLRSIIVVAVPSTQEHHRRIKLEVAVLPSPPPRPPQLRSRTHRRCLLSLSDSRRLIFQPYPLTFYILPHSLTQTLIAVVMKQRQSTKIITPLAGSLASSHRHQSLLS 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g00948 335 Pfam Helix-loop-helix DNA-binding domain 132 171 IPR011598 GO:0046983
Aip01g00948 335 Gene3D - 121 190 IPR036638 GO:0046983
Aip01g00948 335 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 126 181 IPR036638 GO:0046983
Aip01g00948 335 SMART finulus 128 177 IPR011598 GO:0046983
Aip01g00948 335 PANTHER TRANSCRIPTION FACTOR HEC2 1 215 - -
Aip01g00948 335 CDD bHLH_AtIND_like 123 179 - -
Aip01g00948 335 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 1 215 IPR045843 GO:0003700|GO:0006355
Aip01g00948 335 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 122 171 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g00948 Aip-Chr1 18024722 18029333 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g00948 4 180 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G50330 56.915 3.82e-47 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aip01g00948 HLH 2.1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g00948 - - gmx:100796649 223.402
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g00948 01 18024722 18029333 Aip01g00948 01 18024722 18029333 ECH