Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g00889 ATGTCGTCGACGAATTCCCCATGCGCGGCGTGCAAGTTCCTTCGTCGGAAGTGCACACAAGAGTGCATTTTCGCACCATACTTCCCGCCGGACAACCCACAGCGCTTCGCATGCGTCCATCGCGTCTTCGGCGCCAGCAACATCGGCAAGATCCTCAACGATCTTAGCCCCTGCCAGCGGGAAGATGCGGTGACGTCCCTTGCGTTCGAGGCGGAGGCGCGCCTCGACAGCCCAGTGTACGGGTGCGTCAGACACATCGTCATCCTTCAACAGCGCCTGCAACAAATACAAATGGACCTCCTCCACGCCAAGAGCGAACTCAGCGCCTACATCAACCCACAAGGCATTCAGGGTCCGTTCTCCCCTCATGGAATTCGAGGGCTCCCACTTTACCCTCAAGGAAAGCCGCCGTCTTCGTCTGCGGCTCTTTTCGGCCCGCCTTACGGCCCAAATGTTATTCAGTCTTTGATGCCACCATCTTCTGTGCAGCATAATGGAACAATGATTGCTAATGCCGACCTGGATCCAGAGCAGCGCGAGTTGTTGGAGGCCCAACAACTCGCAGCACAGCAACATGACATGATGGTCAGAAACTATGAACATCAGCATCAGCAAGAGTATCTAAGATACAACGGTGCTACTGGGATTATTGAACCTGTGGCAGCTGCAAGTCCGGTTTCAGTTGTCACAGCCGACGGCGATGGCCGTGGAAGTGGAGTTTTTGCCCAGATGGCTGCACATTCAGGCGCTCAAGGAGGTGAACTGGCACCTTCTTTGGGTTTGGGGACATTTGACAGTGGTGGAACTTATCATCATCAGTTGCAACAACAACCACCACAACATGGAGGAGTAGGGGAAAATTATGTTGGTCTTGCAAATCGTCATCACTATCCTGTTGAGGCGCAATTCCTGCTCCCATCACAACAACAACAACCGTTAGAGAGTGAGGACTTTGTGGCTTTTGCTTATAATAATAAACAGGCGAGAGAGCAGGAAGTAGTTGAGGAAGCTGGTGGCTACTGGTCATGGAATCGGAATCTATCAATAGTGAGAGGTTGTAATGGTTCACCTCTGGCTCTAAAAGTTATTGGTGGATCCCTGTGTCATCATCCTTATGAGTTCTGGCAAACAATGAAGGAACGGCTTAAATCCAACAAAGACTTGGATTCTCACCTTCAGAATTGTCTAGACATAGTGGAAGACGACAAGGAGAAGGAGTGTTTCATGGACCTAGGTCTGTTCCCTGAAGATCAAAGGATCCGCGTTCCTTTGCTGAATGACATGTGGACAGAACTGCATGAACTTGATGAGGATGGAGTAAAAGCAATGAATATTATACATAGTTTAAACTCCAAGAATTTGGCTAATCTCATTGTTACAAGGAAAGTTGCAACGGACGTGGAAATGTACTACAATAACCACTTCCTTATGCAGCATGATCTCCTTAGAGAGCTAGCAAACCATCAAAGCAACCAAGAACCCATCGAGCCAAGGAAAAGGCTGGCGATCGACTTGACTCAGAATGGGAAAAATTGTCCCAACTGGTTGGTAGGCCAGAATCAGCCGGGTATCATTTCTCGCATGCTGTCATTCTTATCTGTAAGGGGGACACAACAACAACAGAAGCAGGAACAAGACACTGCTCCCATAATGTTTGTTTCAACTGATGAAACATTCACTCCTGACTGGTACAACATGAACCCTGATGAAACTGAAGTTCTGATTTTAAATATCCATTCAAACAAGTATACATTTCCGGATTTCATTCAGAAAATGAGAAAACTCAAAGTTCTCATAGTCACAAATCAGGGTTTCCATCCTTGTGAATTGAACAACTTTGAGGCTTTTGGTAGTGGCATCAAAATTTCAGATGCACTGCCAAATTTAGTGGAGTTGAACATTGACTATTGCATGGATATGGTGGAATTGCCTTCTGATTTCTGTAACATTATGACCATGAAGAAGCTTAGTATCACTAACTGTCATAAGCTTTCTAAACTACCACCAGAAATCGTTATGCTGAAGAATCTGGAAGTTTTGAGACTTAGTTCCTGCTCTGATTTGAAAGAGATGCCAAAATCTGTTGGAAGGCTTCAACAGATTTGGTGTCTGACATCGGCGAGTTGCATAGTCTACGGTAGGAGTGTCAAGGCCCGGTGA 2160 0.4681 MSSTNSPCAACKFLRRKCTQECIFAPYFPPDNPQRFACVHRVFGASNIGKILNDLSPCQREDAVTSLAFEAEARLDSPVYGCVRHIVILQQRLQQIQMDLLHAKSELSAYINPQGIQGPFSPHGIRGLPLYPQGKPPSSSAALFGPPYGPNVIQSLMPPSSVQHNGTMIANADLDPEQRELLEAQQLAAQQHDMMVRNYEHQHQQEYLRYNGATGIIEPVAAASPVSVVTADGDGRGSGVFAQMAAHSGAQGGELAPSLGLGTFDSGGTYHHQLQQQPPQHGGVGENYVGLANRHHYPVEAQFLLPSQQQQPLESEDFVAFAYNNKQAREQEVVEEAGGYWSWNRNLSIVRGCNGSPLALKVIGGSLCHHPYEFWQTMKERLKSNKDLDSHLQNCLDIVEDDKEKECFMDLGLFPEDQRIRVPLLNDMWTELHELDEDGVKAMNIIHSLNSKNLANLIVTRKVATDVEMYYNNHFLMQHDLLRELANHQSNQEPIEPRKRLAIDLTQNGKNCPNWLVGQNQPGIISRMLSFLSVRGTQQQQKQEQDTAPIMFVSTDETFTPDWYNMNPDETEVLILNIHSNKYTFPDFIQKMRKLKVLIVTNQGFHPCELNNFEAFGSGIKISDALPNLVELNIDYCMDMVELPSDFCNIMTMKKLSITNCHKLSKLPPEIVMLKNLEVLRLSSCSDLKEMPKSVGRLQQIWCLTSASCIVYGRSVKAR 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g00889 719 PANTHER PLANT BROAD-SPECTRUM MILDEW RESISTANCE PROTEIN RPW8 311 710 IPR039203 GO:0050832
Aip01g00889 719 Gene3D Ribonuclease Inhibitor 529 709 IPR032675 -
Aip01g00889 719 PRINTS Disease resistance protein signature 672 688 - -
Aip01g00889 719 PRINTS Disease resistance protein signature 353 367 - -
Aip01g00889 719 Gene3D - 386 488 IPR036388 -
Aip01g00889 719 SUPERFAMILY RNI-like 571 704 - -
Aip01g00889 719 Pfam Lateral organ boundaries (LOB) domain 7 103 IPR004883 -
Aip01g00889 719 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g00889 Aip-Chr1 16409484 16415209 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g00889 1 271 AS2 family AT5G66870 42.456 1.41e-53 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Aip01g00889 LOB 3.7e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g00889 - - aip:110262357 615.535
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g00889 01 16409484 16415209 Aip01g00889 01 16409484 16415209 ECH
Aip05g00688 05 8740972 8743294 Aip01g00889 01 16409484 16415209 PCT