Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g00888 ATGTCATCGACGCCTACACCATGCGCGGCATGCAAGTTTCTTCGTCGGAAGTGCACACCGGAGTGCATTTTCGCACCGTACTTCCCAGCGAACAACCCAGAGCGCTTCGAATGCGTCCACCGCGTCTTCGGCGCCAGCAACGTCGGCAAGATCCTCAACGAGCTACCTCCATCCCAGCGCGAGGATGCGGTGAAGTCCCTTGCGTTCCAGGCGAAGGCACGCCTTCGCAACCCGGTCTATGGCTGCACCTTCCAAGTCTCCATCCTCCAGCAGCTCCTCCGCCAGAGACGTGCCGTCCTCGAAAACGCCAAGAGAGAACTTAGCGCCTACATCAACCCGCAAGCCATTCAAGGTCCATTCAACCCTCAGGAAAAGCCTCTATCTTCATCTCCCGCCCATTTAGGCCCTTCCTGCTGCTCCAATATTGTACAGTATTCAGCCCATTTAAACCCATTCTACGATCCAAATGTTGTACACTCTTCAGTCCATTTGGGCCTATCGGACGGCCCAGATGATGAACCTTTTTTTAAGCCAGCTATCCAGTATAATGGGTCATTGGGTGGTGGTGGTGCTGTCCCGCAAGCGGACCCAGGGCAACAAGAGTTGTTGGAGGCCCAACAACTTGCTGCTGCTGTGGCATTCCGAGAACAGCAACTAAGATACAATGCTGCTGCTGGGATTGAACCTGTTGCGGCTGCAGCACCCTACGGCGGTAACGTCAGTGGAAGTGGAGTGTTTGGCCACATGGGTGCACCTTCAGGCGGTCAAGGAGGTGAGATGGCACCTTGTATGGGTTTGGGGACATTTGATAGTGGTGAAAGTTATCATTCACAATTGCAACAACCACCACAGCATGGAGTAGGGGGAAATTACGTCCTTGCAACTCAACATCACTACCCTCTTGAGGGCCAGTTGCTGCTCCCATCAGAGCACCAAGCACTACCTTTAACCCTACAACAACAACAGCAACTAGAACTACAAGTATTGCAACAACAACTAGAACTACAACTATTACAACAACAACAACAACTAGAACTACAACTATTACAACAACAACAGGAGCAGCAGCAACTACAACAACTGTCAGAGAGTGAAGACAGTAAGAGTGTCGGCCCTTCTTGA 1122 0.5169 MSSTPTPCAACKFLRRKCTPECIFAPYFPANNPERFECVHRVFGASNVGKILNELPPSQREDAVKSLAFQAKARLRNPVYGCTFQVSILQQLLRQRRAVLENAKRELSAYINPQAIQGPFNPQEKPLSSSPAHLGPSCCSNIVQYSAHLNPFYDPNVVHSSVHLGLSDGPDDEPFFKPAIQYNGSLGGGGAVPQADPGQQELLEAQQLAAAVAFREQQLRYNAAAGIEPVAAAAPYGGNVSGSGVFGHMGAPSGGQGGEMAPCMGLGTFDSGESYHSQLQQPPQHGVGGNYVLATQHHYPLEGQLLLPSEHQALPLTLQQQQQLELQVLQQQLELQLLQQQQQLELQLLQQQQEQQQLQQLSESEDSKSVGPS 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g00888 373 Coils Coil 86 106 - -
Aip01g00888 373 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
Aip01g00888 373 PANTHER LOB DOMAIN-CONTAINING PROTEIN 32-RELATED 4 141 - -
Aip01g00888 373 Coils Coil 321 361 - -
Aip01g00888 373 Pfam Lateral organ boundaries (LOB) domain 7 103 IPR004883 -
Aip01g00888 373 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g00888 Aip-Chr1 16406172 16407293 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g00888 1 152 AS2 family AT5G66870 53.947 3.23e-49 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Aip01g00888 LOB 3.7e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g00888 - - ahf:112710769 522.702
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g00888 01 16406172 16407293 Aip01g00888 01 16406172 16407293 ECH
Aip01g00888 01 16406172 16407293 Aip05g00688 05 8740972 8743294 PCT