Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g00887 ATGGTTTCAATGCTCAAATCGAAGGTAAACCTGCCGGAGAATTCTCCTCCCATGGCCGAGTTGTTGATGAACGAATACGCTAAGTCAATTCAGTTGATGTTTGAAAACTCGCTTTGTTTCATGGTAGGGTTCATGGTAGCCAACTTCGCAATCCTCGAAGCTGCATTTGAGAACAAAACGGAGCTGAAGAGGTCATGCATGGTTGATTTCGATATAGGCCACGGGAAACAGTACGCGAGCCTTCTACTCGCGCTCTCTATGCGTGGGAGAACCCCGTCGGCCATGGTAAGGATCGTGGCGGTGGCGGACACCGACGGCCAAGAAGAGAAATTAAAATATGTGGGCGAAATGCTAGCAAAACAGGCAGAGAGGTTTAGGATCCTATTCGAGCTCAAAATCATTCAGGTCACTTAG 414 0.4807 MVSMLKSKVNLPENSPPMAELLMNEYAKSIQLMFENSLCFMVGFMVANFAILEAAFENKTELKRSCMVDFDIGHGKQYASLLLALSMRGRTPSAMVRIVAVADTDGQEEKLKYVGEMLAKQAERFRILFELKIIQVT 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g00887 137 ProSiteProfiles GRAS family profile. 1 137 IPR005202 -
Aip01g00887 137 PANTHER SCARECROW-LIKE PROTEIN 8 1 135 IPR030013 -
Aip01g00887 137 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 1 135 IPR005202 -
Aip01g00887 137 Pfam GRAS domain family 20 134 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g00887 Aip-Chr1 16343380 16343830 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g00887 1 134 GRAS Transcription Factor Family AT5G52510 38.356 3.89e-22 89.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Aip01g00887 GRAS 4.5e-19 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g00887 - - aip:107644872 218.779