LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aip01g00883	ATGGATCGGGCGGCGGTTACCGTCGGACCCGGCATGGACATGCCGATCATGCACGACAGCGACCGTTACGATCTGGTCCGTAACATCGGGTCAGGAAACTTCGGCATCGCAAGATTGATGCAGGATAAGCAGACCAAGGAGCTCGTTGCTGTTAAGTACATCGAACGCGGCGACAAGATTGATGAAAATGTCAAGAGAGAAATCATTAATCACAGGTCTTTGAGACACCCTAACATTGTTAGGTTTAAGGAGGTTATTTTAACACCTACGCATCTGGCCATTGTAATGGAATATGCATCTGGAGGAGAACTGTTTGAGCGAATCTGCAATGCTGGGCGCTTCTCGGAGGATGAGGCTCGTTTCTTCTTTCAACAACTCATATCTGGGGTCAGCTACTGCCATGCAATGCAAGTTTGTCACCGGGACCTGAAGCTGGAGAACACTTTGCTGGATGGAAGCCCAGCACCACGTTTGAAGATATGCGATTTTGGCTACTCCAAGTCTTCGGTGCTTCATTCACAACCAAAGTCAACAGTTGGTACTCCAGCTTATATAGCTCCAGAAGTATTGCTGAAGCAAGAGTACGATGGCAAGATTGCAGATGTCTGGTCATGTGGAGTAACTTTATATGTGATGCTAGTGGGAGCATATCCTTTTGAAGATCCTAGTGAACCAAAGGATTTTAGGAAGACAATTCAGAGAATTCTCAGTGTCCAGTATTCCATTCCAGACTTTGTTCAGATATCTCCTGAATGTCGCCACCTTATCTCAAGGATCTTTGTTTTTGACCCTGCAGAGAGAATCACGATGTCTGAGATCTGGAACCATGAATGGTTTTTGAAGAATCTCCCGGCAGATCTGATGGATGAGAAGATAATGGGCAACCAATTTGAAGAGCCAGACCAACCAATGCAGAGCATTGATACAATCATGCAGATAATCTCAGAAGCTACCATACCAGCAGCGGGGGCCTATTCCTTAGACCAGTTTATGGCAGATAACATTGACATGGATGACGACATAGATGAATTAGAATCCGAATCCGAGCTTGATATAGATAGCAGTGGGGAGATAGTGTATGCCATATAA	1089	0.4545	MDRAAVTVGPGMDMPIMHDSDRYDLVRNIGSGNFGIARLMQDKQTKELVAVKYIERGDKIDENVKREIINHRSLRHPNIVRFKEVILTPTHLAIVMEYASGGELFERICNAGRFSEDEARFFFQQLISGVSYCHAMQVCHRDLKLENTLLDGSPAPRLKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLLKQEYDGKIADVWSCGVTLYVMLVGAYPFEDPSEPKDFRKTIQRILSVQYSIPDFVQISPECRHLISRIFVFDPAERITMSEIWNHEWFLKNLPADLMDEKIMGNQFEEPDQPMQSIDTIMQIISEATIPAAGAYSLDQFMADNIDMDDDIDELESESELDIDSSGEIVYAI	362

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Aip01g00883	362	SMART	serkin_6	23	279	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Aip01g00883	362	SUPERFAMILY	Protein kinase-like (PK-like)	16	314	IPR011009	-
Aip01g00883	362	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	138	150	IPR008271	GO:0004672\|GO:0006468
Aip01g00883	362	PANTHER	SUCROSE NONFERMENTING 1(SNF1)-RELATED KINASE	14	356	-	-
Aip01g00883	362	Pfam	Protein kinase domain	23	279	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Aip01g00883	362	Gene3D	Transferase(Phosphotransferase) domain 1	99	286	-	-
Aip01g00883	362	Coils	Coil	327	347	-	-
Aip01g00883	362	PANTHER	SERINE/THREONINE KINASE	14	356	-	-
Aip01g00883	362	Gene3D	Phosphorylase Kinase; domain 1	1	98	-	-
Aip01g00883	362	ProSiteProfiles	Protein kinase domain profile.	23	279	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Aip01g00883	Aip-Chr1	16271374	16277331	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aip01g00883	16	289	CBL-interacting serine-threonine protein kinases	AT4G24400	42.756	7.92e-68	218

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_OST1L	Aip01g00883		Pkinase	3.7e-71	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aip01g00883	K14498		-	gmx:100806949	672.93

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Aip01g00883	01	16271374	16277331	Aip01g00883	01	16271374	16277331	ECH
	Aip01g00883	01	16271374	16277331	Aip05g00695	05	8846649	8851261	PCT

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