Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Aip01g00855 | ATGCTTCTGGACAAGAATGTCATTCATGAAACGCATTATGAGGTTCTCAATGTCAAGGAAGATTCAAGTTATGAAGAAATCCGTGCTAGTTACCGCTCCGCCATACTCAGTTTACATCCTGATAAGCTATTGAAATCTTCTGATGCATCCGGCAGCAATCAAATTAGTGGAGATAGATTTCTCAAAGTACAAAAGGCATGGGAAGTTCTTGGCGATTCAAGCTCTCGTTTATTTTATGATAATGAGCTTCGAAGTTCAAGGCGTGATGTCTCGGCTGTTGATGTTGCAGAAGATTTAAGCTTAGAGGATATGATGGCTGAAGATGACGGAGAAGCATTAGAACTGTTTTATCAGTGCAGATGTGGAGATTACTTCTCTATAGACTCATTGGAATTGCAAAAAATGGGGTATTCCTTGTTGAGGGATGAAAGTAGAATATCTATATTGAACAATAATTCTTTGCTGGGATCACTTATTCTTCCCTGCAGATCATGTTCTCTAAAAGCTCGTCTGGTAATCAATATGGATGGACATTGA | 537 | 0.3892 | MLLDKNVIHETHYEVLNVKEDSSYEEIRASYRSAILSLHPDKLLKSSDASGSNQISGDRFLKVQKAWEVLGDSSSRLFYDNELRSSRRDVSAVDVAEDLSLEDMMAEDDGEALELFYQCRCGDYFSIDSLELQKMGYSLLRDESRISILNNNSLLGSLILPCRSCSLKARLVINMDGH | 178 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Aip01g00855 | 178 | SUPERFAMILY | Chaperone J-domain | 10 | 83 | IPR036869 | - | |
| Aip01g00855 | 178 | PANTHER | DPH3 HOMOLOG-RELATED | 1 | 176 | IPR044248 | GO:0017183|GO:0046872 | |
| Aip01g00855 | 178 | ProSiteProfiles | dnaJ domain profile. | 11 | 83 | IPR001623 | - | |
| Aip01g00855 | 178 | Gene3D | DnaJ domain | 2 | 87 | IPR036869 | - | |
| Aip01g00855 | 178 | SUPERFAMILY | CSL zinc finger | 96 | 176 | IPR036671 | - | |
| Aip01g00855 | 178 | SMART | dnaj_3 | 10 | 75 | IPR001623 | - | |
| Aip01g00855 | 178 | PRINTS | DnaJ domain signature | 13 | 31 | IPR001623 | - | |
| Aip01g00855 | 178 | PRINTS | DnaJ domain signature | 31 | 46 | IPR001623 | - | |
| Aip01g00855 | 178 | PRINTS | DnaJ domain signature | 55 | 75 | IPR001623 | - | |
| Aip01g00855 | 178 | Pfam | CSL zinc finger | 98 | 172 | IPR007872 | - | |
| Aip01g00855 | 178 | CDD | DnaJ | 11 | 72 | IPR001623 | - | |
| Aip01g00855 | 178 | Gene3D | DPH Zinc finger | 88 | 178 | IPR036671 | - | |
| Aip01g00855 | 178 | Pfam | DnaJ domain | 11 | 80 | IPR001623 | - | |
| Aip01g00855 | 178 | PANTHER | DIPHTHAMIDE BIOSYNTHESIS PROTEIN 4 | 1 | 176 | - | - | |
| Aip01g00855 | 178 | ProSiteProfiles | DPH-type metal-binding (MB) domain profile. | 95 | 174 | IPR007872 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Aip01g00855 | Aip-Chr1 | 15534738 | 15541107 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Aip01g00855 | 12 | 80 | C2H2 Transcription Factor Family | AT1G74250 | 43.478 | 6.04e-11 | 58.5 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Aip01g00855 | K17867 | - | gmx:100814856 | 266.159 |