Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g00846 ATGGATTTCGTAACCCTTGAATTTGGGGCTTTGGAGAAGGTTACTCGAGAATTCGAATCCTTTTTCCGCATCGCCAACGATTATCTTCCTCTCAACCAAGCCTTTCCTCAAAGGAGTGGTCAGGAAGGGAAAAAAAAAAAAGAAAAAGAAAAAGAAAAATATTTGATGGCTAGTGGGTTTGGGGAATCAACAACAACGCCGAGAAGAGAGTCTCATCCAAGCCCATCTTGCTCAGGGAACAATGGTTCTAATGATGCTGGTGATTTTGAATGCAACATATGCTTTGATTTGGCTCAAGATCCAGTGATCACACTGTGTGGGCACCTATTCTGTTGGCCATGCCTTTATATGTGGCTGCATCATCACTCTCAATGTCAAGAGTGCCCTGTGTGCAAGGCCCTTGTGCAGGAAGAGAAGCTGGTTCCTCTTTATGGCAGGGGTAAGGCTCAGACTGATCCTAGGACTAAGAGCTATCCTGGAATGGAGGTTCCTCGCCGTCCCTCCGGCCAGAGGCCGGAGACAGCGCCACAGCCGCCACCCCAACAGCCGGGGCCCAATTTGTTCGGGAATTATGGGTTTGGGTTGATGGGCGGATTCATACCTATGGCTACGGCAACATTTGGGAACTTCACACTGTCCACTGCTTTTGGAGGGTTTATCCCATCACTGCTTAACATTCAATTCCAACCGTTTCATGATGCCACTGTCTATGGAACAACTTCGGGGTATCCTTTTGGGTTTACTTCACACCAAGGTGGTAATCCTCGAGGCTTTACGCAGGCAGCGACACGTCAAGAGCTGAGGCCTGAGGACAATGCTCTGAAGAATCTGCTTTTGTTGATTGGTTGCTTATTTGTGACTAATTTATATAAAGCCAAATTGGACCGCAACTTCTTGGTGgcggaaaacgatgcagacatcgacagactgaatgaaacttcgcattacgctgaggcagccgactttgagagacatcgccttctactgccttggcgatggtatccaccaaatagaggaatctaccagtatcttatggctgcggggttggttggattgcagcagcagagcagggatcagcatgaggacaaggtcctgcattggagggtttcgatcgaccggttacgattcgatgagtttgtacggagagcgtacgatgaccttgctatgcatctgtccggtcaggagattttggaggatccgagactcgtcgaGTTGCCCCCGACGTACAGCCCACTGCCAGCCAGCCTAGGGAGGATCTCCACCTTCCCCGGGGAGTGCCGGATCGGTGTAGATGTGCAAGGGAGGTCAGGGCAGATACCTGGCGACCTACTAGGAGGGACAGAAGTGCTAGAGAGTGTCGACCAGGCAAGCCGGTTAGGAGGGAGAGGGTCAGGGTTCGACTggatgtag 1410 0.3872 MDFVTLEFGALEKVTREFESFFRIANDYLPLNQAFPQRSGQEGKKKKEKEKEKYLMASGFGESTTTPRRESHPSPSCSGNNGSNDAGDFECNICFDLAQDPVITLCGHLFCWPCLYMWLHHHSQCQECPVCKALVQEEKLVPLYGRGKAQTDPRTKSYPGMEVPRRPSGQRPETAPQPPPQQPGPNLFGNYGFGLMGGFIPMATATFGNFTLSTAFGGFIPSLLNIQFQPFHDATVYGTTSGYPFGFTSHQGGNPRGFTQAATRQELRPEDNALKNLLLLIGCLFVTNLYKAKLDRNFLVAENDADIDRLNETSHYAEAADFERHRLLLPWRWYPPNRGIYQYLMAAGLVGLQQQSRDQHEDKVLHWRVSIDRLRFDEFVRRAYDDLAMHLSGQEILEDPRLVELPPTYSPLPASLGRISTFPGECRIGVDVQGRSGQIPGDLLGGTEVLESVDQASRLGGRGSGFDWM 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g00846 469 MobiDBLite consensus disorder prediction 145 186 - -
Aip01g00846 469 MobiDBLite consensus disorder prediction 57 81 - -
Aip01g00846 469 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 80 152 IPR013083 -
Aip01g00846 469 PANTHER RING ZINC FINGER PROTEIN-RELATED 57 286 - -
Aip01g00846 469 Pfam Zinc finger, C3HC4 type (RING finger) 90 131 - -
Aip01g00846 469 SUPERFAMILY RING/U-box 87 144 - -
Aip01g00846 469 SMART ring_2 91 131 IPR001841 -
Aip01g00846 469 MobiDBLite consensus disorder prediction 171 185 - -
Aip01g00846 469 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 57 286 IPR045103 GO:0005783|GO:0006511|GO:0061630
Aip01g00846 469 ProSiteProfiles Zinc finger RING-type profile. 91 132 IPR001841 -
Aip01g00846 469 ProSitePatterns Zinc finger RING-type signature. 106 115 IPR017907 -
Aip01g00846 469 CDD RING-HC_AtRMA_like 89 133 - -
Aip01g00846 469 MobiDBLite consensus disorder prediction 59 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g00846 Aip-Chr1 15169357 15176473 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g00846 80 289 C3H Transcription Factor Family AT2G23780 59.817 1.76e-81 250
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g00846 K10666 - gmx:100814783 359.377