Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g00842 ATGCAATCCTTTACCATCATTATCCATGTCCTCACCTTGTCCTTATTGTATCATTTCTATGTGATTCTAGCTCAGCAACCTTACATTGGTGTGGCCACAACTGCATGTTCCCAAACTCTTAACTCAAATTCAATCCTCGGTTACACTTGCAATGGCTTGAAACCTAGTTGCCAATCTTACCTTACCTTCGAGTCTCAAATCAACTACAACTCTGTTCCTACAATTTCTTCTTTGTTGAACATTGATCCCACCCAGCTTTCCAAAGCGAATTCCGTTTCCCAGAACGCAACCTTTGAAATAAACAAGCTGGTGATTGTTCCTGTAAACTGTTCCTGTTTTGCTAATCAGTATTATCAGTATAACACTTCTTATAAGGTCCAAAGTGGCGACAACTATTTCATCATTGCTAACAACACTTTTGAAGGCCTTTCAACATGTCAAGCTATGAAGGATCAAAACAAAATCGATGAGTTAAAGCTTTCACCCGGTGATAAACTTAGAGTTCCTCTTAGATGTGCTTGTCCTACAAAGAATCAAACAGAGAAAGGTTTCAAGTACCTATTGAGTTACTTAGTTTCCTTTGGGGATGATGTTTCTCACATTAGTGAAAGATTTGGTGTTACCATTGAAACAATTCTTGAAGCTAATAGCCTTTCTTCCCAGAAACCAACCATCAATCCTTTTACCACACTTCTGGTTCCCCTTCAAGAAAAGCCATCAAGTTCACAAACGGTTATGACTCCACCGCCTCCGTCTCTGTCGCCATCGCAGCCGCCTCCGTCTTCTTCTGGTGGAAGTTCAAGCAAGACTTGGGTCTATGTGGTTGTCGGAGTTGTCGGAGGTGTAGTCTTAGTTTTAGTCCTCTTCTCCATCATTTTCAGGAAGCATTTTCACAAAATCAGAAAGAAGAAGAAGAAAGGCAATTCTGTGATTGTGTCTAAGAGCTTTGAAGCAATTGAGAAACAACAGGGGAAGAAGTTGGAGGAAGATTCAGAAACATTGTCAGAGATCATATCCGACATAGCACAATCATTCAAGGTTTACAAATTCAAGGAACTGCAGAGTGCAACAAATGATTTCAGTTCCGAATTATTGATCAAAGGGTCCGTTTATCGCGGCCTTATAAATGGAGATTTAGCTGCAATCAAGAAGATAAACAGAGATGTGTCCAAAGAGGTACAATTGCTGAACAAAGTGAATCATTCTAACGTGATTCGCCTCTCCGGCGTTAGCTTCAACGAGGGACATTGGTATCTTGTTTATGAGTATGCTGCTAATGGACCATTGAGTGATTGTATTTTTATGGAAAATGGCCAGTTCTTGAGTTGGAAACAGAGAATAAAAATTGCATTGGATGTGGCCACAGGACTTGACTATCTTCACAGTTTCACTTCTCCACCTTTTATCCACAAGGATTTAAAATGTGACAACATTCTTCTAGACGCTGATTTCAGGGCGAAGATTGCCAACTTTGGCCTCGCCCGGTCGATACAAGGCGAGGAAGACGAATTTTCGATGACAAGGCACATAGTGGGGACAAGAAATTACATGGCTCCTGAGTATTTGCAAAATGGTATAGTGTCTACAAAGCTTGATGTCTACGCATTTGGGGTTATGGTGGTGGAAATACTCACTGGAAGAGATGTTGCTGCTATCTACGCGGAATATGACAAGAAGAATTTAGAAGAAATTTTAAGCAGCATAGTTAAAGAGGAAGGAGATCATGAAAGACTAAAGGAATTTATGGATCCGTCATTGAAAGGAAATTATGCAACGGAGCATGCTGTGTTTATTATTGGAATGATTGAAAAATGTATAAAGAAAGATCCAGCTAGTCGACCTTCAATGCAAGACATTGTGTCATCTTTGTCCAAAGCCTTGGACTCATTGAACTGGGAATCCTTGGTTAATATCTCAGGATAG 1923 0.4025 MQSFTIIIHVLTLSLLYHFYVILAQQPYIGVATTACSQTLNSNSILGYTCNGLKPSCQSYLTFESQINYNSVPTISSLLNIDPTQLSKANSVSQNATFEINKLVIVPVNCSCFANQYYQYNTSYKVQSGDNYFIIANNTFEGLSTCQAMKDQNKIDELKLSPGDKLRVPLRCACPTKNQTEKGFKYLLSYLVSFGDDVSHISERFGVTIETILEANSLSSQKPTINPFTTLLVPLQEKPSSSQTVMTPPPPSLSPSQPPPSSSGGSSSKTWVYVVVGVVGGVVLVLVLFSIIFRKHFHKIRKKKKKGNSVIVSKSFEAIEKQQGKKLEEDSETLSEIISDIAQSFKVYKFKELQSATNDFSSELLIKGSVYRGLINGDLAAIKKINRDVSKEVQLLNKVNHSNVIRLSGVSFNEGHWYLVYEYAANGPLSDCIFMENGQFLSWKQRIKIALDVATGLDYLHSFTSPPFIHKDLKCDNILLDADFRAKIANFGLARSIQGEEDEFSMTRHIVGTRNYMAPEYLQNGIVSTKLDVYAFGVMVVEILTGRDVAAIYAEYDKKNLEEILSSIVKEEGDHERLKEFMDPSLKGNYATEHAVFIIGMIEKCIKKDPASRPSMQDIVSSLSKALDSLNWESLVNISG 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g00842 640 Pfam LysM domain 190 234 IPR018392 -
Aip01g00842 640 Pfam LysM domain 124 169 IPR018392 -
Aip01g00842 640 SMART serkin_6 362 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip01g00842 640 Gene3D LysM domain 119 178 IPR036779 -
Aip01g00842 640 ProSiteProfiles Protein kinase domain profile. 286 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip01g00842 640 ProSiteProfiles LysM domain profile. 122 168 IPR018392 -
Aip01g00842 640 ProSiteProfiles LysM domain profile. 188 233 IPR018392 -
Aip01g00842 640 Gene3D Transferase(Phosphotransferase) domain 1 425 635 - -
Aip01g00842 640 ProSitePatterns Serine/Threonine protein kinases active-site signature. 468 480 IPR008271 GO:0004672|GO:0006468
Aip01g00842 640 MobiDBLite consensus disorder prediction 244 258 - -
Aip01g00842 640 PANTHER LYSM DOMAIN RECEPTOR-LIKE KINASE 4 5 634 - -
Aip01g00842 640 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 5 634 - -
Aip01g00842 640 Pfam Protein kinase domain 369 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip01g00842 640 CDD LysM 189 233 IPR018392 -
Aip01g00842 640 MobiDBLite consensus disorder prediction 239 265 - -
Aip01g00842 640 Gene3D Phosphorylase Kinase; domain 1 328 423 - -
Aip01g00842 640 SMART LysM_2 123 169 IPR018392 -
Aip01g00842 640 SMART LysM_2 189 234 IPR018392 -
Aip01g00842 640 Gene3D LysM domain 179 246 IPR036779 -
Aip01g00842 640 SUPERFAMILY Protein kinase-like (PK-like) 343 623 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g00842 Aip-Chr1 15035876 15037936 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g00842 1 633 Receptor kinase-like Gene Family AT2G23770 43.818 7.23e-166 486
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Aip01g00842 Pkinase 5.8e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g00842 - - aip:107626052 1165.98