Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g00841 ATGAGAATTCCTACTAAATTTCCAAACGTTGCTAATATGAGATTCCACTGGGTGCGCGTAGTACCGAATTCTGCTGCAGTGAACCAAACCTTGTGTTTTCTAGGTTTTCAAACTGCAATGGACCATGCCGAATTAACCACCGACCAGGTTCTGAGGAGGGACATTCCATGGGAGACGTACATGTCTACCAAGCTCATCTCTGGCACAAGCCTTCAGCTCTTAAGGCGTTATGATCACCGATCAGAGAGTCACAGAGCACAGTTGCTCGATGATGATGGTCCGGCTTATGTTCGCGTGTTTGTTCATGTCTTGCGTGATATTTTCAAAGAAGATACTGTAGAATATGTTTTGGCTCTAATTGATGAGATGCTGGCTGCGAACCCGAAAAGAGCAAGATTGTTTCATGATAGCTCCCTTTCAGATGAAGATACCTATGAGCCTTTCTTAAGAAACTGGTTCATACAAGAGAAAAGTTGTAAGATCCTTGCTTTGATAGTTAGTGCCAGGCCTAAAAATCAGAATGGTGTTGTTTCAAATGGAGATACATCAAAGAAACCCTTCACCACTATTGATGATGTTTTGAGAGCATTGGTAAAATGGCTTTGTGAACAGCTCAAGAAGCCATCTCATCCCAATCGTGGAGTCCCAACTGCTGTCAATTGCTTAGCAACTCTGCTTAAGGAACATCTGGTTAGGTCTTCCTTTGTTCAAGCAGATGGAGTGAAGTTGCTTGTGCCATTGATTTCACCAGCATCCACCCAACAATCTATTCAGATTCTGTATGAAGCATGTCTCTGCATATGGCTGCTATCCTATTATGAGCCGGCAATTGAATATTTGGCTACTTCGAGGGCCCTTCCACGACTTATTGACGTTGTTAAGACTTCTACAAAAGAAAAGGTTGTTAGAGTAGTGGTCTTGACTCTTAGAAACTTGCTGTCAAAAGGGAGTTTGGGTGCTCAGATGGTTGACTTTCAGCTGCCACAAGTTGTTCAGAGTTTAAAAGCTCAAGCTTGGAGTGATGAGGACTTGCTGGAGGCATTGAATTCTCTTGAAGAAGGGCTAAAAGATAACATTAAGAAACTTAGTTCTTTTGATAAGTACAAGCAAGAAGTCCTGCTTGGTCATCTGGATTGGTCCCCGATGCACAAAGATCCATTGTTTTGGCGAGAAAATATTAATCACTTTGAAGAAAATGACTTCCAGATTCTAAGGGTCCTAGTTACAATTCTTGATACGTCCAGTGATCCAAGAACTCTGGCTGTTGCTTGCTTTGACATTTCACAGTTCATCCAGCACCATCCTTCTGGTCGGATCATTGTGGCGGACCTTAAAGCCAAGGAACGAGTAATGAAACTAATGAATCATGAGAATACCGAGGTTACTAAAAATGCACTGCTCTGCATCCAACGGCTTTTCTTAGGGGCAAAGTATGCAAGCTTTTTGCAAGCCTAG 1455 0.4247 MRIPTKFPNVANMRFHWVRVVPNSAAVNQTLCFLGFQTAMDHAELTTDQVLRRDIPWETYMSTKLISGTSLQLLRRYDHRSESHRAQLLDDDGPAYVRVFVHVLRDIFKEDTVEYVLALIDEMLAANPKRARLFHDSSLSDEDTYEPFLRNWFIQEKSCKILALIVSARPKNQNGVVSNGDTSKKPFTTIDDVLRALVKWLCEQLKKPSHPNRGVPTAVNCLATLLKEHLVRSSFVQADGVKLLVPLISPASTQQSIQILYEACLCIWLLSYYEPAIEYLATSRALPRLIDVVKTSTKEKVVRVVVLTLRNLLSKGSLGAQMVDFQLPQVVQSLKAQAWSDEDLLEALNSLEEGLKDNIKKLSSFDKYKQEVLLGHLDWSPMHKDPLFWRENINHFEENDFQILRVLVTILDTSSDPRTLAVACFDISQFIQHHPSGRIIVADLKAKERVMKLMNHENTEVTKNALLCIQRLFLGAKYASFLQA 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g00841 484 SMART arm_5 434 474 IPR000225 GO:0005515
Aip01g00841 484 SMART arm_5 227 272 IPR000225 GO:0005515
Aip01g00841 484 SMART arm_5 273 314 IPR000225 GO:0005515
Aip01g00841 484 PANTHER V-TYPE PROTON ATPASE SUBUNIT H 41 484 IPR004908 GO:0000221|GO:0046961|GO:1902600
Aip01g00841 484 PANTHER V-TYPE PROTON ATPASE SUBUNIT H 41 484 - -
Aip01g00841 484 PIRSF V-ATP_synth_H 35 483 IPR004908 GO:0000221|GO:0046961|GO:1902600
Aip01g00841 484 Pfam V-ATPase subunit H 361 473 IPR011987 GO:0000221|GO:1902600
Aip01g00841 484 Pfam V-ATPase subunit H 42 355 IPR004908 GO:0000221|GO:0046961|GO:1902600
Aip01g00841 484 Gene3D - 375 476 IPR038497 -
Aip01g00841 484 SUPERFAMILY ARM repeat 46 474 IPR016024 -
Aip01g00841 484 Gene3D - 37 363 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g00841 Aip-Chr1 15025503 15033203 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g00841 40 484 Primary Pumps ATPases(2) AT3G42050 77.778 0.0 726
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g00841 K02144 - gmx:100796479 778.859