Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g00840 ATGGGTTGGTTTACCAAGCTGCTTAAGGGATCCAACCATAAATCTTCGAGAGGAAAATATCATGGGAAACATGAAAATTCCATGGATGATTTGACAGATGTTGAGAGAGAAGAAATTGATCGTGCAATTGCACTCTCTCTTTCGGAGGAAGATCCGAAAGGGAAAAAAGTTATTGAGGACGACCCTCAATCTTCTGATGATGAACAACTGTGTGAACTTACTGATGAAGATGAATATCATGGTGAAGTTAAACAACATGAAGAGTTAAGCAATCATCACAAAGAAGAAGATGAATCTGTTGGTGAAGTTGAGGAAGAGGAAGATGACCATCTTAATAACATTCAACAGGATAATGACAAGCATCTTGCAGAAGCGCAGCTTGAGGAAGATGAACAACTTGCCAGAGCACTTCAAGAAAGTTTGAACATTGATTCAGACAGAGCTGAAAGAGATTCTTTATTTCAACCATTTCCACACCTCCTTCGACCTGTATACAGAACCTGTGCTGGCTGCAATTCAGAGATTGGCCATGGCAGATTTTTGAGTTGCATGGGAGGTGTCTGGCATCCAGAATGTTTCTGTTGCCATGCTTGTAATTTGCCAATCACTGATTATGAGTTTTCCATGTCTGGAAATCGTCGTTACCATAAATCTTGCTACAAGGAGCTGCATCACCCAAGATGTGATGTTTGCAAGAACTTCATCCCACCAAATTCAGCTGGACTCATTGAGTATAGAGCACATCCTTTCTGGATGCAGAAATACTGTCCTTCACATGAGCGTGATGGAACTCCTCGTTGTTGTAGCTGCGAAAGAATGGAGTCAAGGGATACAAAGTATCTCTTGCTGGATGACGGTCGAAAGTTGTGCCTAGAGTGTCTAGACTCAGCTATTATGGATACGCATGAATGCCAGCCTCTCTATCTTGAAATACAAGAATTCTATGAAGGTTTAAATATGAAAATAGAACAGCAAGTTCCAATGCTTTTAGTTGAGAGACAAGCACTCAACGAGGCCATGGAGGGAGAAAAGAATGTAAATATTTACTATGTTGAACTAAACTCTCTTTTCATGGGATATGCTGCTTATTTTAATTGTCTCGCCACTATTTTAAGAAGACCAAGGATAGGGGCAGGATACCGAGTCATAGATATGATAACTGAGCCTTACAGGCTAATCCGCCATTGCGAAGTGACAGCCATACTTGTTTTGTATGGCCTCCCTAGGTTATTGACGGGTTCAATCCTGGCCCATGAGATGATGCATGCTTGGCTTAGGCTTAAAGGCTATGGCAATTTAAGGCCAGAAGTTGAAGAAGGAATTTGCCAAGTGCTAGCTCACATGTGGCTAGATTCAGAGATCTACGCTGGTTCAGGAAGTGATAGTGCATCATCGTCCTCGTCCTCATCATCATCCTCATCCTCACCTTCCTCTTCTACATCATCAAAGAAGGGTAAACGGTCTGACTTTGAGAAGAAACTTGGTGAGTTTTTCAAACACCAGATTGAGTCCGATCGTTCATCGGCTTATGGAGATGGATTCAGAGAGGGGAACCAAGCTGTGCTCAAGGTTGGGAGATTGAAGAAGATTTCGCAGGAGACTCTGCTGTGCCCTAGCAGAGGTCGTCGTTTCGTTCCCAACTCGGAGAAGACGTCTAGAACACTCCCAAGCCATCACCTTGAAGCTACGGGTTTCAACGCTGTCATTCCCAACTCGGAAAAGACCTTCGGAGCAGTAGCAAGCGATCAGTACGAAAACGTAAAAGAGGAACGTGCAAGGAATTTAATAGCGAGCAGAGCTCGAACCCAGGGGTTTCGTCGTCGACGGTGCAGAGGTCACTCTCTTTGGTTGGCAGAGAGCATAGGAATGGCCACCATCCATATAACACTGTGTATTAATCATAGAGGACGGTTTGAGAGAGGGCCGTGTGGGAAAGACATAGGATATACATCTGTTACTAATTTTTTTTTGCTGGAACCTAGGAAGGAGCTTGATGATGGGTTGAGGGACCTAAGGGTTGATATGGATATAGTTAGAATGTATGAGGCAGCTGTGAAGAACAGTAACAAAATAAATATATATACAGAGCATCCGGTGGATGAGCCCGTGTTAATTGAGGAGAACAATATGACTCCATCAAAGATGAGAGTAAAGCACTGTACTAAAAGGGTTCCAACTCCGAAGAAGAGTCCAAAAAGAAGATTGATAGTAGTGGAAAATGAGGATGATGCTGAAATTGTACGTAACGTGCAAGTTGGGATGGAGGACCGAAAAAGGAGTGAGGCCCAGAGCAGTGAAGAGGCCCATGAAGCACATAAACAGGCTGGAGTTGAGGCCCAAAAAGAGGACAATGTCAGTATGGCCCATGAGACAGCAGACCCACTACTTTCAGTATCTGATGAGGCAGGACAGGTTTCTCAGCCTCCCTCAACACCTGTCATACCAGATAAACCACCATCAACTCAGTCCCAACCTTCCCAGCCACCTATTCAAGAAGATCAGCAACCAACACACACTGCTTATTCAGACCCAGTCCTGCCTTCTGAACCCAATGTCTCTGCCCCTATTGAACTAGAACAACTAACCCAATACATCCCACATCCGTATGGGAATCCACTTTTACAATCAATCCCTCAGTCAGGCCCACCCTCTGAGACCAATAGGACTCCCCAGAATGATCAGAGCAATCCTTCAGATGAGGTTAAGGGAAGGCCAAAGGTGAACAAGAGGAGATCAACAAATAGACCTCCCCCTACAGGGCAGTCTTTCATCCCAAACCCTGATCCAGACAAGCCGCCAACCTTCTATGTCCCCGTTGATGAGGATGATTTTTCTGATGAATGA 2844 0.443 MGWFTKLLKGSNHKSSRGKYHGKHENSMDDLTDVEREEIDRAIALSLSEEDPKGKKVIEDDPQSSDDEQLCELTDEDEYHGEVKQHEELSNHHKEEDESVGEVEEEEDDHLNNIQQDNDKHLAEAQLEEDEQLARALQESLNIDSDRAERDSLFQPFPHLLRPVYRTCAGCNSEIGHGRFLSCMGGVWHPECFCCHACNLPITDYEFSMSGNRRYHKSCYKELHHPRCDVCKNFIPPNSAGLIEYRAHPFWMQKYCPSHERDGTPRCCSCERMESRDTKYLLLDDGRKLCLECLDSAIMDTHECQPLYLEIQEFYEGLNMKIEQQVPMLLVERQALNEAMEGEKNVNIYYVELNSLFMGYAAYFNCLATILRRPRIGAGYRVIDMITEPYRLIRHCEVTAILVLYGLPRLLTGSILAHEMMHAWLRLKGYGNLRPEVEEGICQVLAHMWLDSEIYAGSGSDSASSSSSSSSSSSSPSSSTSSKKGKRSDFEKKLGEFFKHQIESDRSSAYGDGFREGNQAVLKVGRLKKISQETLLCPSRGRRFVPNSEKTSRTLPSHHLEATGFNAVIPNSEKTFGAVASDQYENVKEERARNLIASRARTQGFRRRRCRGHSLWLAESIGMATIHITLCINHRGRFERGPCGKDIGYTSVTNFFLLEPRKELDDGLRDLRVDMDIVRMYEAAVKNSNKINIYTEHPVDEPVLIEENNMTPSKMRVKHCTKRVPTPKKSPKRRLIVVENEDDAEIVRNVQVGMEDRKRSEAQSSEEAHEAHKQAGVEAQKEDNVSMAHETADPLLSVSDEAGQVSQPPSTPVIPDKPPSTQSQPSQPPIQEDQQPTHTAYSDPVLPSEPNVSAPIELEQLTQYIPHPYGNPLLQSIPQSGPPSETNRTPQNDQSNPSDEVKGRPKVNKRRSTNRPPPTGQSFIPNPDPDKPPTFYVPVDEDDFSDE 947
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g00840 947 MobiDBLite consensus disorder prediction 44 109 - -
Aip01g00840 947 Pfam LIM domain 168 222 IPR001781 -
Aip01g00840 947 SMART uim 34 53 IPR003903 -
Aip01g00840 947 SMART uim 128 147 IPR003903 -
Aip01g00840 947 MobiDBLite consensus disorder prediction 811 825 - -
Aip01g00840 947 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 195 253 - -
Aip01g00840 947 ProSiteProfiles LIM domain profile. 166 226 IPR001781 -
Aip01g00840 947 MobiDBLite consensus disorder prediction 1 32 - -
Aip01g00840 947 Coils Coil 111 140 - -
Aip01g00840 947 CDD LIM_DA1 168 220 - -
Aip01g00840 947 MobiDBLite consensus disorder prediction 749 947 - -
Aip01g00840 947 MobiDBLite consensus disorder prediction 749 788 - -
Aip01g00840 947 Gene3D Cysteine Rich Protein 164 225 - -
Aip01g00840 947 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 128 147 IPR003903 -
Aip01g00840 947 PANTHER TRANSCRIPTION FACTOR INTERACTOR AND REGULATOR LIM FAMILY-RELATED 87 532 - -
Aip01g00840 947 PANTHER TRANSCRIPTION FACTOR INTERACTOR AND REGULATOR LIM FAMILY-RELATED 1 88 - -
Aip01g00840 947 ProSitePatterns LIM zinc-binding domain signature. 168 202 IPR001781 -
Aip01g00840 947 MobiDBLite consensus disorder prediction 826 846 - -
Aip01g00840 947 PANTHER PROTEIN DA1-RELATED 2 87 532 IPR045218 -
Aip01g00840 947 PANTHER PROTEIN DA1-RELATED 2 1 88 IPR045218 -
Aip01g00840 947 MobiDBLite consensus disorder prediction 461 487 - -
Aip01g00840 947 MobiDBLite consensus disorder prediction 44 63 - -
Aip01g00840 947 MobiDBLite consensus disorder prediction 873 898 - -
Aip01g00840 947 CDD LIM 195 270 - -
Aip01g00840 947 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 164 193 - -
Aip01g00840 947 MobiDBLite consensus disorder prediction 920 934 - -
Aip01g00840 947 SMART lim_4 167 219 IPR001781 -
Aip01g00840 947 MobiDBLite consensus disorder prediction 461 483 - -
Aip01g00840 947 MobiDBLite consensus disorder prediction 76 99 - -
Aip01g00840 947 Pfam Protein DA1 317 525 IPR022087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g00840 Aip-Chr1 14959374 14967399 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Aip01g00840 DA1-like 2e-84 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g00840 - - gmx:100806605 789.26