Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g00839 ATGTCCCAAGATTACCACCACCACAATCAAGGAATCTTCACCTTCTCCAATAATGGGTTCGAGAGATCCACACAGGTAACAAACCAAGAACACCATCACCAACATCAACACCACTTGGCTCAGCAAATTCGGAGGGACAAAGTGAGGGTGCAAGGCTTCGATCCACAGCAACCGCCTCCGGCACAGCCACCAACAGCCATAATTGGGATAGAAGAATCCGGAGGCATCCCGGGGTATGAAACTGCCGGGATGCTATCGGAGATGTTCAATTTCCCGCCGGTTGCAGATGCTGCGGCCGGGGAATTATTGGAGCAGCCAATGATAGCGACGTTTCGTTCCCCAACAACGACGAGGTCATTGGGTAGCGATTGGTATGCTGGAAACAGACAAGGGATGATAACCGGCATTAATGCCGATTCGGCTGCAGCCATGCAACTTTTTCTCATGAACCCACAAACCACCACCAGATCACCTTCCCCTCCGTCGTCCCATCACACCACACCCACTCCTCCTTCGTCTTCTTCGACGCTTCACATGCTTCTTCCTAATCCTAATCCCAATACTTCCGTACAAGGCTTCCATGGCGGTGGTGGTACCTTCAACCAATTCACATGGGCCCCTGACAGTGCTCAAGAAGCTCAAGGCCTCTCTTTATCCTTATCCTCTTCGTTACAGCACCTGGAAGCCGCGAAAGCCGAGGAATTGAGGATGGGAGAAAGTGGTTTCCTCTTTTACAACCAAGGAGGTGGTGGTCCTTCATCTTCCTCTTCTTCTGCTCAGTATCCTTACAAGAATCTCCCTAGCCATCACCAACAACACCAAGCATTGCATATTCAAGGAACGTCGTTGGGGCAGAATCACCACCAAGGACCCATTGGGTTTGGATCATCTTCGTCTTTGGGTCTAGTCAACGTCCTCAGGAATTCCAAGTATGTCAAGGCCGCTCAGGAGTTGCTTGAAGAGTTCTGCAGCGTTGGGAGGGGTCAGTTCAAGAAAAACAAGTTCACTAGGCAGCTCTCAAACCCTAGCTCCAATCAAGGTGGCGCCGCCGCCGCTTCTTCATCTTCGTCAAAGGAACTTCCTCCTTTGTCAGCTTCTGATAGGATCGAGCATCAAAGGCGGAAGGTCAAGCTTCTCACCATGCTTGATGAGGCATGTGGTTCAATTAATTTCTTTTGGTGGTTCAATTTATTACTAAAACAGGTGGACCGTAGGTACAGTCACTACTGCGAGCAAATGCACATGGTGGTGAACTCGTTCGACCTGGTGATGGGGTACGGGGCGGCGGTACCGTACACGGCGCTGGCGCAGAAGGCGATGTCGCGGCACTTCCGGTGCCTGAAGGATGCAATAACGACGCAGTTGAAACACAGCTGCGAGGTTCTTGGAGAGAAGGAAGGGGTGGGGACGACGGGGCTGACGAAGGGGGAGACGCCGCGGCTGAAGATGCTGGAGCAGAGCTTGAGGCAGCAGAGGGCGTTCCACCAAATGGGGATGATGGAGCAGGAGGCTTGGAGACCCCAAAGAGGCTTGCCTGAACGATCTGTCAACATTTTGAGAGCCTGGCTATTCGAGCATTTTCTTCACCCGTACCCAAGCGATGCAGATAAGCATCTCTTAGCAAGACAGACTGGGTTATCAAGAAATCAGGTATCAAACTGGTTTATTAACGCCAGGGTTCGTTTGTGGAAACCCATGGTTGAAGACATGTACCAACAAGAACTCAAAGATGCAGAGGGTGCAACAGAAGAAGAAGACGACGAAGGAGAAAGCAACAACAATAGTGGCAATCATGTACAAACTCCACTGCCACCATCATCAACAACTACAACACCACCACCACTTCAATTATCATCGTCAACACCAACAAGTAATAATAACAACAATGTTAATAAAAGATCAGATATTATCATCAATGCCCAAGATAGTGACCCTTCATTAGCAGCAATTAATAGACAAGGCTTAGAAATTCAAGCAAAGCAGCCAGCTACAAGTTCCACCGCCAACACCACCGTCACCCCACCTGTAGTGTCACAGTGTTTTGACTCAGAGCAGCTACTAAATGAGGATACGTGTGGCCACGGAAGCATAGTGAGTGCAGAATATGGAAGTGTTGCTGCAATGACTGAGATAGGGTCTTCTTCAAGTACTCTCATCAGGTTTGGGACAACAGCTGCACCCGGCGATGTGTCACTCACGCTGGGGCTACGACACACTGGGAACAACTCCTTTCTCCATTAG 2241 0.4993 MSQDYHHHNQGIFTFSNNGFERSTQVTNQEHHHQHQHHLAQQIRRDKVRVQGFDPQQPPPAQPPTAIIGIEESGGIPGYETAGMLSEMFNFPPVADAAAGELLEQPMIATFRSPTTTRSLGSDWYAGNRQGMITGINADSAAAMQLFLMNPQTTTRSPSPPSSHHTTPTPPSSSSTLHMLLPNPNPNTSVQGFHGGGGTFNQFTWAPDSAQEAQGLSLSLSSSLQHLEAAKAEELRMGESGFLFYNQGGGGPSSSSSSAQYPYKNLPSHHQQHQALHIQGTSLGQNHHQGPIGFGSSSSLGLVNVLRNSKYVKAAQELLEEFCSVGRGQFKKNKFTRQLSNPSSNQGGAAAASSSSSKELPPLSASDRIEHQRRKVKLLTMLDEACGSINFFWWFNLLLKQVDRRYSHYCEQMHMVVNSFDLVMGYGAAVPYTALAQKAMSRHFRCLKDAITTQLKHSCEVLGEKEGVGTTGLTKGETPRLKMLEQSLRQQRAFHQMGMMEQEAWRPQRGLPERSVNILRAWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPMVEDMYQQELKDAEGATEEEDDEGESNNNSGNHVQTPLPPSSTTTTPPPLQLSSSTPTSNNNNNVNKRSDIIINAQDSDPSLAAINRQGLEIQAKQPATSSTANTTVTPPVVSQCFDSEQLLNEDTCGHGSIVSAEYGSVAAMTEIGSSSSTLIRFGTTAAPGDVSLTLGLRHTGNNSFLH 746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g00839 746 MobiDBLite consensus disorder prediction 152 195 - -
Aip01g00839 746 SUPERFAMILY Homeodomain-like 507 572 IPR009057 -
Aip01g00839 746 SMART prehox3 300 453 IPR006563 -
Aip01g00839 746 MobiDBLite consensus disorder prediction 612 631 - -
Aip01g00839 746 MobiDBLite consensus disorder prediction 337 362 - -
Aip01g00839 746 CDD homeodomain 505 566 IPR001356 GO:0003677
Aip01g00839 746 Gene3D - 508 570 - -
Aip01g00839 746 ProSiteProfiles 'Homeobox' domain profile. 502 565 IPR001356 GO:0003677
Aip01g00839 746 Pfam Associated with HOX 305 452 IPR006563 -
Aip01g00839 746 Pfam Homeobox KN domain 522 561 IPR008422 GO:0003677|GO:0006355
Aip01g00839 746 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 68 742 - -
Aip01g00839 746 MobiDBLite consensus disorder prediction 575 631 - -
Aip01g00839 746 MobiDBLite consensus disorder prediction 337 366 - -
Aip01g00839 746 SMART HOX_1 505 569 IPR001356 GO:0003677
Aip01g00839 746 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 2 68 742 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g00839 Aip-Chr1 14940114 14950803 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g00839 34 552 Homeobox Transcription Factor Family AT4G36870 49.826 2.18e-131 399
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Aip01g00839 POX 1.6e-47 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g00839 - - peu:105126512 756.903