Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g00836 ATGGGCAACTTGGTCATTGCATACATTATTTTAGCCTTTTATTCTCTCTTCATTATTGTGCATGGCACTGATAAGTTATCATGCAATCAAACTCCATATCCCACTCTTTGTAACCATTACATTGGCACTACCAATTATTCAATTTCATCATCATCAAGTGATGTTTCCTCTTCTTATTATTCCTTCCATGACCTGGCCCTTAAGGTCACCAGGGACCAAGCAATAGTAGCACACAAACTTGTCTCATCAACCATGGAATCCAACGATTTCAAAGACAAGAGAGCCAAGTCCGCATGGGAAGATTGTTTGGAACTCTATGAGAATACAATCTATCAGCTCAACCGTTCAATGAGCTCAAACAATCTAAACGACAGGTTAACATGGCAAAGTGCTTCTATTGCGAATCAACAAACATGCCAAAACGGTTTTCTTGATTCTAACCTTTCATCTCACTACCTAAACTACTTTCCATCCATTTCAAGCAACTTATCCAAGTTGCTGAGCAACTCTTTGGCCATTAGCAATACATTAACGTCCTTGACTTCGTTACCAAAAGACCCGGTTGTTGGCGGCGGTCGAAAATTGCTTTCCTTTAATGGCTTCCCAGAGTGGCTATCTCCTTCCGACAGGAGGCTTCTTCAGGCTTTGCCGGGAACGGCGGCACCGAAGGCGGACATTGTGGTGGCACAGGACGGGAGTGGGAATTACAAGAGTGTTTCGGAGGGCGTGGCGGCGGCGGGTAGGGTGAGTAAGAATGGTCGAGTGGTTGTGTACGTGAAAGCTGGTGTTTACCGGGAGAGTGTGAACATAAAGGGAGGTATAAAGAATTTGATGATGTTTGGGGATGGTATTGGAGCTACCATTATTACGGGTAGCAAGAATTATCAAGACGGCTCCACCACTGTTGGTTCAGCTACTTTTACGGTGTCGAGTGATGGGTTCATCGCCAGGGACCTGACAATTGAGAACAGTGCTGGGCCACAGAAGCACCAAGCGGTGGCACTTCTTTCCAGCTCTGATCACTCCGTGTTCTATCGGTGTAGCTTCAGAGGCTACCAAGACACCTTATACGTCCTTTCCCAACGCCAATTCTACCGCGACTGCGACATCTACGGCACCATAGACTTCATCTTTGGTGACGCCGTCGCCCTCTTCCAAAACTGCAACATCTTCTTGAGAAAACCAATGAGTAAGCAACAGAACGCAGTGACAGCACAAGGGAGAACCGATCCCAACGAGAACACCGGCATTGTCATCCACAACTGCCGTATCATGGCGGCTTCAGATCTGAAGCCAGTTCAGGGATCTGTCAAGTGCTTCCTCGGCCGGCCGTGGCAGAAGTACTCAAGAACGGTGGTGGTCAAGAGTAGCCTGGACGGTTTGATTCAACCGGCAGGGTGGATGCCATGGGCGGGAAGCTTTGCCTTGAATACATTGTATTATGGAGAGTATATGAATATTGGAGCTGGTGCTAACACTGCAGGGAGGGTTAAATGGCCTGGCTTTCATGTTATTACCAACCCTACTGAGGCTTTGAAATTTACTGTTGCTAATTTCTTGGATGGTGGATCGTGGATTCCTGGGACTGGTGTTCCGTTTGAAACTGGCCTTTGA 1614 0.4703 MGNLVIAYIILAFYSLFIIVHGTDKLSCNQTPYPTLCNHYIGTTNYSISSSSSDVSSSYYSFHDLALKVTRDQAIVAHKLVSSTMESNDFKDKRAKSAWEDCLELYENTIYQLNRSMSSNNLNDRLTWQSASIANQQTCQNGFLDSNLSSHYLNYFPSISSNLSKLLSNSLAISNTLTSLTSLPKDPVVGGGRKLLSFNGFPEWLSPSDRRLLQALPGTAAPKADIVVAQDGSGNYKSVSEGVAAAGRVSKNGRVVVYVKAGVYRESVNIKGGIKNLMMFGDGIGATIITGSKNYQDGSTTVGSATFTVSSDGFIARDLTIENSAGPQKHQAVALLSSSDHSVFYRCSFRGYQDTLYVLSQRQFYRDCDIYGTIDFIFGDAVALFQNCNIFLRKPMSKQQNAVTAQGRTDPNENTGIVIHNCRIMAASDLKPVQGSVKCFLGRPWQKYSRTVVVKSSLDGLIQPAGWMPWAGSFALNTLYYGEYMNIGAGANTAGRVKWPGFHVITNPTEALKFTVANFLDGGSWIPGTGVPFETGL 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g00836 537 Gene3D - 219 537 IPR012334 -
Aip01g00836 537 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 27 178 IPR035513 -
Aip01g00836 537 CDD PMEI-like_3 26 179 - -
Aip01g00836 537 Pfam Pectinesterase 225 522 IPR000070 GO:0030599|GO:0042545
Aip01g00836 537 ProSitePatterns Pectinesterase signature 2. 370 379 IPR033131 -
Aip01g00836 537 SUPERFAMILY Pectin lyase-like 219 535 IPR011050 -
Aip01g00836 537 SMART PMEI_2 19 173 IPR006501 GO:0004857
Aip01g00836 537 PANTHER PECTINESTERASE 19 536 - -
Aip01g00836 537 PANTHER PECTINESTERASE INHIBITOR 5-RELATED 19 536 - -
Aip01g00836 537 Pfam Plant invertase/pectin methylesterase inhibitor 27 173 IPR006501 GO:0004857
Aip01g00836 537 TIGRFAM PME_inhib: pectinesterase inhibitor domain 27 178 IPR006501 GO:0004857
Aip01g00836 537 Gene3D Invertase/pectin methylesterase inhibitor family protein 25 178 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g00836 Aip-Chr1 14742564 14744288 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g00836 27 537 Carbohydrate Esterase AT1G23200 53.371 0.0 543
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g00836 - - lja:Lj4g3v3099630.1 738.413