Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g00811 ATGATGAATCATTGTTGCAGTAACAGCAACTCTCAGGATCACGTGATGGGCACGTGTAAATGCGGCATGTTCCCCACACCCTATGGAGATGACTATTATTACGGTGACCCAAACAGCTACTCCTTTACACCTTCTTCGTCGTCTTTGTCTTGGTCGTCCGTGGACTGTACCCTCTCCCTGGGGACACCGTCCACGCGATTCTCCGAAGACGAAGACAGGCGAACACGTCATCATCATCATGAACGTCGCTCCAAACAGAATCCTCATCATTCTGAGGCTAAAGCCAGCAAGGGATCCGACGGTGATGCTTTCTTTTCTCGCCGCTGTGCCAACTGTGATACCACTTCCACACCCCTATGGAGGAACGGTCCTCGTGGACCCAAGACACTATGCAATGCATGCGGGATTAGATACAAGAAAGAAGAGAGAAGAGCCAGCGCTACTGCAGCCGCTACCACAACCACCGTTACTAACAGCGGCGGCGAAATGGAGCCGGTTGCGGCGCACATGTACGGCCGCAACAATAACAATTCGTGGTACTATACAAACTCTCAAGGCAATAATAATGGCGAGTTACGTTTCATGGATTATGATGCCAATGATGACATGGACCCATTCCCTTCTTGGAGACTCAACGCTGCAGACAGAACAAATCTCGTTCACGACTTTACAAGATGA 678 0.5 MMNHCCSNSNSQDHVMGTCKCGMFPTPYGDDYYYGDPNSYSFTPSSSSLSWSSVDCTLSLGTPSTRFSEDEDRRTRHHHHERRSKQNPHHSEAKASKGSDGDAFFSRRCANCDTTSTPLWRNGPRGPKTLCNACGIRYKKEERRASATAAATTTTVTNSGGEMEPVAAHMYGRNNNNSWYYTNSQGNNNGELRFMDYDANDDMDPFPSWRLNAADRTNLVHDFTR 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g00811 225 ProSiteProfiles GATA-type zinc finger domain profile. 106 139 IPR000679 GO:0006355|GO:0043565
Aip01g00811 225 PANTHER GATA TRANSCRIPTION FACTOR 18 21 222 IPR044272 GO:0003700|GO:0009908
Aip01g00811 225 MobiDBLite consensus disorder prediction 63 102 - -
Aip01g00811 225 Pfam GATA zinc finger 109 143 IPR000679 GO:0006355|GO:0043565
Aip01g00811 225 Gene3D - 105 167 IPR013088 GO:0006355|GO:0008270
Aip01g00811 225 SMART GATA_3 103 155 IPR000679 GO:0006355|GO:0043565
Aip01g00811 225 ProSitePatterns GATA-type zinc finger domain. 109 134 IPR000679 GO:0006355|GO:0043565
Aip01g00811 225 CDD ZnF_GATA 108 140 IPR000679 GO:0006355|GO:0043565
Aip01g00811 225 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 105 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g00811 Aip-Chr1 14237373 14238643 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g00811 52 225 C2C2-Gata Transcription Factor Family AT3G50870 41.597 8.03e-41 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Aip01g00811 GATA 9e-18 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g00811 - - gsj:114390318 182.185
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g00800 05 10605380 10606730 Aip01g00811 01 14237373 14238643 PCT
Aip01g00811 01 14237373 14238643 Aip05g00350 05 3860265 3868203 PCT