Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g00780 ATGGGCAACTTGGTCATTGCGTACATTATTTTAGCCTTTTATTCTCTCTTCATTATTGTGCATGGCACTGATAAGTTATCATGCAATCAAACTCCATATCCCACTCTTTGTAACCATTACATTGGCACTACCAATTATTCAATTTCATCATCATCAAGTGATGTTTCCTCTTCTTATTATTCCTTCCATGACATGGCCCTTAAGGTCACCATGGACCAAGCAATAGTAGCACACAAACTTGTCTCATCAACCATGGAATCCAACGATTTCAAAGACAAGAGAGCCAAGTCCGCATGGGAAGATTGTTTGGAACTCTATGAGAATACAATCTATCAGCTCAACCGTTCAATGAACTCAAACAATCTAAACGACAGAATGGGCAACTTGGTCATTGCGTACATTATTTTAGCCTTTTATTCTCTCTTCATTATTGTGCATGGCACTGATAAGTTATCATGCAATCAAACTCCATATCCCACTCTTTGTAACCATTACATTGGCACTACCAATTATTCAATTTCATCATCATCAAGTGATGTTTCCTCTTCTTATTATTCCTTCCATGACATGGCCCTTAAGGTCACCATGGACCAAGCAATAGTAGCACACAAACTTGTCTCATCAACCATGGAATCCAACGATTTCAAAGACAAGAGAGCCAAGTCCGCATGGGAAGATTGTTTGGAACTCTATGAGAATACAATCTATCAGCTCAACCGTTCAATGAGCTCAAACAATCTAAACGACAGGTTAACATGGCAAAGTGCTTCTATTGCGAATCAACAAACATGCCAAAACGGTTTTCTTGATTCTAACCTTTCATCTCACTACCTAAACTACTTTCCATCCATTTCAAGCAACTTATCCAAGTTGCTGAGCAACTCTTTGGCCATTAGCAATACATTAACGTCCTTGACTTCGTTACCAAAAGACCCGGTTGTTCGCCGCGGTCGAAAATTGCTTTCTTTTAATGGCTTCCCAGAGTGGCTATCTCCTTCCGACAGGAGGCTTCTTCAGGCTTTGCCGGGAACGGCGGCACCGAAGGCGGACATTGTGGTGGCACAGGACGGGAGTGGGAATTACAAGAGTGTTTCGGAGGGCGTGGCGGCGGCGGGTAGGGTGACGGTGTCGAGTGATGGGTTCATCGCCAGGGACTTAACAATTGAGAACAGTGCTGGGCCACAGAAGCACCAAGCGGTGGCACTTCTTTCCAGCTCCGATCACTCCGTGTTCTACCGGTGTAGCTTCAGAGGCTACCAAGACACCTTATACGTCCTTTCCCAACGCCAATTCTACCGCGACTGCGACATCTACGGCACCATAGACTTCATCTTCGGTGACGCTGTCGCCCTCTTCCAAAACTGCAACATCTTCTTGAGAAAACCAATGAGTAAGCAACAGAACGCAGTGACAGCACAAGGGAGAACCGATCCCAACGAGAACACCGGCATTGTCATCCACAACTGCCGCATCATGGCGGCTTCAGATCTGAAGCCAGTTCAGGGATCTGTCAAGTGCTTCCTTGGCCGGCCGTGGCAGAAGTACTCAAGAACGGTGGTGGTCAAGAGTAGCCTGGACGGTTTGATTCAACCGGCAGGGTGGATGCCATGGGCGGGAAGCTTTGCTTTGAATACATTGTATTATGGAGAGTATATGAATATTGGAGCAGGTGCTAACACTGCAGGGAGGGTCAAATGGCCTGGCTTTCATGTTATTACCAACCCTACTGAGGCTTTGAAATTTACTGTTGCTAATTTCTTGGATGGTGGATCGTGGATTCCTGGGACTGGTGTTCCGTTTGAAACTGGCCTTTGA 1815 0.4556 MGNLVIAYIILAFYSLFIIVHGTDKLSCNQTPYPTLCNHYIGTTNYSISSSSSDVSSSYYSFHDMALKVTMDQAIVAHKLVSSTMESNDFKDKRAKSAWEDCLELYENTIYQLNRSMNSNNLNDRMGNLVIAYIILAFYSLFIIVHGTDKLSCNQTPYPTLCNHYIGTTNYSISSSSSDVSSSYYSFHDMALKVTMDQAIVAHKLVSSTMESNDFKDKRAKSAWEDCLELYENTIYQLNRSMSSNNLNDRLTWQSASIANQQTCQNGFLDSNLSSHYLNYFPSISSNLSKLLSNSLAISNTLTSLTSLPKDPVVRRGRKLLSFNGFPEWLSPSDRRLLQALPGTAAPKADIVVAQDGSGNYKSVSEGVAAAGRVTVSSDGFIARDLTIENSAGPQKHQAVALLSSSDHSVFYRCSFRGYQDTLYVLSQRQFYRDCDIYGTIDFIFGDAVALFQNCNIFLRKPMSKQQNAVTAQGRTDPNENTGIVIHNCRIMAASDLKPVQGSVKCFLGRPWQKYSRTVVVKSSLDGLIQPAGWMPWAGSFALNTLYYGEYMNIGAGANTAGRVKWPGFHVITNPTEALKFTVANFLDGGSWIPGTGVPFETGL 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g00780 604 Gene3D Invertase/pectin methylesterase inhibitor family protein 150 303 IPR035513 -
Aip01g00780 604 Gene3D Invertase/pectin methylesterase inhibitor family protein 25 130 IPR035513 -
Aip01g00780 604 TIGRFAM PME_inhib: pectinesterase inhibitor domain 27 121 IPR006501 GO:0004857
Aip01g00780 604 TIGRFAM PME_inhib: pectinesterase inhibitor domain 152 303 IPR006501 GO:0004857
Aip01g00780 604 Gene3D - 372 604 IPR012334 -
Aip01g00780 604 SMART PMEI_2 144 298 IPR006501 GO:0004857
Aip01g00780 604 SMART PMEI_2 19 138 IPR006501 GO:0004857
Aip01g00780 604 Pfam Pectinesterase 373 589 IPR000070 GO:0030599|GO:0042545
Aip01g00780 604 PANTHER PECTINESTERASE INHIBITOR 5-RELATED 144 372 - -
Aip01g00780 604 CDD PMEI-like_3 26 127 - -
Aip01g00780 604 Pfam Plant invertase/pectin methylesterase inhibitor 27 120 IPR006501 GO:0004857
Aip01g00780 604 Pfam Plant invertase/pectin methylesterase inhibitor 152 298 IPR006501 GO:0004857
Aip01g00780 604 CDD PMEI-like_3 151 304 - -
Aip01g00780 604 PANTHER PECTINESTERASE 144 372 - -
Aip01g00780 604 PANTHER PECTINESTERASE 374 603 - -
Aip01g00780 604 PANTHER PECTINESTERASE 19 130 - -
Aip01g00780 604 SUPERFAMILY Pectin lyase-like 344 602 IPR011050 -
Aip01g00780 604 ProSitePatterns Pectinesterase signature 2. 437 446 IPR033131 -
Aip01g00780 604 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 152 303 IPR035513 -
Aip01g00780 604 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 27 124 IPR035513 -
Aip01g00780 604 PANTHER PECTINESTERASE INHIBITOR 5-RELATED 374 603 - -
Aip01g00780 604 PANTHER PECTINESTERASE INHIBITOR 5-RELATED 19 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g00780 Aip-Chr1 13648632 13651451 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g00780 132 604 Carbohydrate Esterase AT2G45220 44.507 2.92e-144 426
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g00780 - - aip:107646806 932.169