Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g00726 GTTCCTATGACTGGAACCGCGGTCAAGGTGATAATCATACACCCATTGGTTCTCTGGGTGACTATTTCATTGGTCCTGGTTTGGATTTACTGTTGCAACATTTGGCCGAGAATGATCCCAATAGGCACGGAACTCCACCTGCGCAGAAGGAGGCCATTGAAGCATTGCCTACCGTGACAATTGACGAGAATATGCAATGTTCTATTTGCCTTGATGATCTTGAAGTTGGTTCTGAAGCCAAACAGATGCCCTGTAAACATATGTTTCATAGTGGATGTATCCTTCCTTGGTTGGAGCTCCATAGTTCTTGTCCAGTTTGCAGGTATCAGTTGCCCGCTGATGAATCTAAGCGCGAACCGGATGCGTCCTTGAGGACTAGCAGTAATCAAAGGGAGGATGAAAATACTGGACATGACAATGTTGATGGGGATATTGAAGGAAGAAATGCAAGTGGGAGTAGAAGATTCTCCTTTCCATGGCCTTTCAATGGTTTATTTTCTTCACCAAACCCTTCAGCAGCATCTTCTTCTAGCAACAATCCAAATGGAGATAATGTTACTCGATCAGAAGAGAACTGA 578 0.4429 SYDWNRGQGDNHTPIGSLGDYFIGPGLDLLLQHLAENDPNRHGTPPAQKEAIEALPTVTIDENMQCSICLDDLEVGSEAKQMPCKHMFHSGCILPWLELHSSCPVCRYQLPADESKREPDASLRTSSNQREDENTGHDNVDGDIEGRNASGSRRFSFPWPFNGLFSSPNPSAASSSSNNPNGDNVTRSEEN 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g00726 191 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 32 113 IPR013083 -
Aip01g00726 191 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 12 165 - -
Aip01g00726 191 SMART ring_2 66 106 IPR001841 -
Aip01g00726 191 ProSiteProfiles Zinc finger RING-type profile. 66 107 IPR001841 -
Aip01g00726 191 Pfam Ring finger domain 65 107 IPR001841 -
Aip01g00726 191 MobiDBLite consensus disorder prediction 114 151 - -
Aip01g00726 191 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 12 165 - -
Aip01g00726 191 MobiDBLite consensus disorder prediction 166 191 - -
Aip01g00726 191 MobiDBLite consensus disorder prediction 166 185 - -
Aip01g00726 191 SUPERFAMILY RING/U-box 55 115 - -
Aip01g00726 191 MobiDBLite consensus disorder prediction 114 148 - -
Aip01g00726 191 CDD RING-H2_RNF126_like 65 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g00726 Aip-Chr1 12127474 12128051 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g00726 16 118 C3H Transcription Factor Family AT5G01980 41.667 4.75e-26 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g00726 K11982 - gmx:100784876 273.478