Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g00701 ATGGATGAACCCATGGAAAGTGGTGAGAGGCCAGTCTTCAAAGATATTAGACGCTACTTCTGTGAATACTGTGGCATTTGCAGGTCTAAAAAGATCTTAATTACCTCCCACATCAATTCACAACACAAGGACGAGTTGGAAAAAGCTAGAGCTGAAGGAAATAATGAAGCACATTGCGAAAAGCCCAACAACACTTGCCAACAATGTGGTGCTAGCTTCAAAAAACCTGCCTACTTGTTGCAGCACATGCAAAGCCATTCACTTGAGAGGCCGTATGTGTGTACGGTTGATGATTGTCAGGCAAGTTACAGAAGAAAGGACCATTTGACTCGTCACCTTCTACAGCATGAAGGGAAAACTTTTAAATGTCCAATGGATAATTGCAACCTAATCTTCTCAATAAAAGGTAATATGGCAAGACATGTTAAAGAGATTCATGATGAAGGATCTACATCCACAAATGTAGAAAGTAAGCAGTTTGTGTGCCCAGAAACTGGCTGTGGAAAGGTTTTCAAGTTTGCATCAAAGCTTCGTAAACATGAAGATTCTCATGGCAAGTTTTCATCTAATTTGATTTTCTTTCTGCAGTCGGTAGATGTAGTGTGCTTGGAGCCTGGTTGCATGAAACATTTCACTAATAACCAGTGCCTTAAAGAACATATTGAATCCTGTCATCAATATGTAACCTGCGACACTTGTGGAAGTAGACAACTGAAAAAGAATATTAAAAGGCACCTTCGCACACATGAAGCTGACAAATCACTGGCAGAGTTTAAATGTGAATTTAAGGGCTGTAGCTGCAAATTCTCAAGCAAATCCAATCTCGTTACACATAAGAAGGTCGTGCACTTTAAAGAAAAGCCCTTTGTGTGTGGTTTTCCTGATTGTGGCCTGAGATTTGCTTACAAACATGTCAGAGATAAACACGAAAAAACTGGGAAACATGTTTTTACCCATGGGAATTTTGAAGAAGCTGATGAACAATTCAGGTCAAGGCCAAGGGGTGGGAGGAAGAGAGTGTGTCCTACAGTAGAAATGTTGGTCAGGAAAAGGGTTACACCACCTAGTCAATTGGAGAATTTGTTATTTATGCAGGAGTGA 1101 0.4033 MDEPMESGERPVFKDIRRYFCEYCGICRSKKILITSHINSQHKDELEKARAEGNNEAHCEKPNNTCQQCGASFKKPAYLLQHMQSHSLERPYVCTVDDCQASYRRKDHLTRHLLQHEGKTFKCPMDNCNLIFSIKGNMARHVKEIHDEGSTSTNVESKQFVCPETGCGKVFKFASKLRKHEDSHGKFSSNLIFFLQSVDVVCLEPGCMKHFTNNQCLKEHIESCHQYVTCDTCGSRQLKKNIKRHLRTHEADKSLAEFKCEFKGCSCKFSSKSNLVTHKKVVHFKEKPFVCGFPDCGLRFAYKHVRDKHEKTGKHVFTHGNFEEADEQFRSRPRGGRKRVCPTVEMLVRKRVTPPSQLENLLFMQE 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g00701 366 SUPERFAMILY beta-beta-alpha zinc fingers 239 294 IPR036236 -
Aip01g00701 366 ProSitePatterns Zinc finger C2H2 type domain signature. 291 315 IPR013087 -
Aip01g00701 366 Gene3D Classic Zinc Finger 10 91 - -
Aip01g00701 366 SUPERFAMILY beta-beta-alpha zinc fingers 78 118 IPR036236 -
Aip01g00701 366 ProSiteProfiles Zinc finger C2H2 type domain profile. 92 121 IPR013087 -
Aip01g00701 366 SUPERFAMILY beta-beta-alpha zinc fingers 119 147 IPR036236 -
Aip01g00701 366 Pfam Zinc finger, C2H2 type 65 86 IPR013087 -
Aip01g00701 366 Pfam Zinc finger, C2H2 type 258 283 IPR013087 -
Aip01g00701 366 Pfam Zinc finger, C2H2 type 160 184 IPR013087 -
Aip01g00701 366 Pfam Zinc finger, C2H2 type 92 116 IPR013087 -
Aip01g00701 366 Gene3D Classic Zinc Finger 117 157 - -
Aip01g00701 366 SUPERFAMILY beta-beta-alpha zinc fingers 154 184 IPR036236 -
Aip01g00701 366 SMART c2h2final6 92 116 IPR013087 -
Aip01g00701 366 SMART c2h2final6 19 42 IPR013087 -
Aip01g00701 366 SMART c2h2final6 228 249 IPR013087 -
Aip01g00701 366 SMART c2h2final6 160 184 IPR013087 -
Aip01g00701 366 SMART c2h2final6 289 315 IPR013087 -
Aip01g00701 366 SMART c2h2final6 121 146 IPR013087 -
Aip01g00701 366 SMART c2h2final6 64 86 IPR013087 -
Aip01g00701 366 SMART c2h2final6 200 225 IPR013087 -
Aip01g00701 366 SMART c2h2final6 258 283 IPR013087 -
Aip01g00701 366 ProSitePatterns Zinc finger C2H2 type domain signature. 66 86 IPR013087 -
Aip01g00701 366 ProSiteProfiles Zinc finger C2H2 type domain profile. 258 288 IPR013087 -
Aip01g00701 366 ProSitePatterns Zinc finger C2H2 type domain signature. 162 184 IPR013087 -
Aip01g00701 366 ProSitePatterns Zinc finger C2H2 type domain signature. 94 116 IPR013087 -
Aip01g00701 366 ProSitePatterns Zinc finger C2H2 type domain signature. 260 283 IPR013087 -
Aip01g00701 366 Gene3D Classic Zinc Finger 286 312 - -
Aip01g00701 366 SUPERFAMILY beta-beta-alpha zinc fingers 17 92 IPR036236 -
Aip01g00701 366 ProSitePatterns Zinc finger C2H2 type domain signature. 202 225 IPR013087 -
Aip01g00701 366 ProSiteProfiles Zinc finger C2H2 type domain profile. 121 151 IPR013087 -
Aip01g00701 366 ProSiteProfiles Zinc finger C2H2 type domain profile. 160 184 IPR013087 -
Aip01g00701 366 ProSiteProfiles Zinc finger C2H2 type domain profile. 64 91 IPR013087 -
Aip01g00701 366 PANTHER - 9 357 - -
Aip01g00701 366 PANTHER ZINC FINGER PROTEIN 9 357 - -
Aip01g00701 366 Gene3D Classic Zinc Finger 196 281 - -
Aip01g00701 366 ProSitePatterns Zinc finger C2H2 type domain signature. 123 146 IPR013087 -
Aip01g00701 366 Gene3D Classic Zinc Finger 92 116 - -
Aip01g00701 366 Gene3D Classic Zinc Finger 158 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g00701 Aip-Chr1 11400226 11402390 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g00701 88 318 C2H2 Transcription Factor Family AT1G72050 48.944 5.51e-87 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aip01g00701 zf-C2H2 0.012 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g00701 K09191 - gmx:100801812 545.814