Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g00668 ATGAGAATAAATCCTACCACTTCTGGTCCTGAGATTTCTGTGCTTGAAAAAAAAAACCTGGGACGTATCGACCAAATAATAGGTCCGGTATTGGATGTAGCTTTCCCTCCAGGGAAGATGCCAAATATTTACAACGCTCTGGTAGTAAAGGGTCGAGACATTGTTGGTCAACAAATTAACGTGACTTGTGAAGTACAGCAATTATTAGGAAATAATCGAGTTAGAGCTGTAGCTATGAGCGCTACAGATGGTCTAATGAGAGGAATGGAAGTGATTGATACGGGAGCTCCCCTAAGTGTTCCAGTGGGCGGAGCAACTCTAGGACGAATTTTTAACGTACTTGGCGAACCTATTGATAATTTGGGTCCTGTAGATACTCGCACAACATCTCCTATTCATCGATCCGCGCCTGCCTTTATACAATTAGACACAAAATTATCCATTTTTGAAACCGGAATTAAAGTAGTAGATCTTTTAGCTCCTTATCGCCGTGGAGGAAAGATTGGACTCTTTGGCGGAGCTGGAGTGGGTTCACATGCAGTGAGAGCTTTATGGCATAATAATGGGAAATATCCAAAAGAAAAAACTTGCATTGAGACGCCATTATTATTGCAGCATAATCAGAAGCATCATTATACATGTGATCAAACCAAGAGAAAACACTTTGTGAATGCAACTCATGCACAATCGAAGAATGAACCTGAATCGCAAGCTGATTCTGCAAAACCCATTTGGAATTCTATCAAAGATGTTATGCATACTATCCAAAAGTTTAGCGTATTCTATGCGTTAATTGGCCTGTTATCGGGCATACTTTTTTCATCACTCCTTGCAGTGGAAAAATTATCAGATTTATCTCCAACATTTTTTATTTCCATGTTACAGATTAATAAGCCATACCGTCCTTTGGCATCATCGAAGATTTCTTTTGGAGGTGGACTCGCTATTGTTGCAGCATCTTTATTTATGAGCTTTGGACTTGCGCTGATGATAGGATCAAAGCCTTTGCTTTGGGGTCTCATATTAATTTTTATACTGATGACTGCTTATTCAGTGAACTTACCCTTTTTAAGATGGAAGAAATCTACAACTCTTACATTACTGTCTGGCGTACCAACTATTCTGACTGCATATAATTTGGCACCATATCTTCACATGAAGACCTTTGTGCTGAAGAAGCCATTCATATTTACAAGATCACTAGCTTTTACCACTGTGGTCATGACCTTCTTCTATGTAGTTATATCATTGTTCAAGGACATACCCGACATTGAAGGAGATAAAAAAGAAGGTCTTCAAACTTTGTCTATACGCTTGGGTCCTAAACGAGTATTTTGGTTGTGTATTTCACTTCTTGAGATGACTTATGGAATTGGCATTATATTGGGATTAACATCTCCATTCCTATGGAGCAAAATCTTCACGGTTATGGCACATGCCATCAATGCTTGGATTTTGTGGTTTCGTGCTAATTCTGTAGATTTAAAGAGCAAAGAAGATTTCCAATCCTTTTATCAGCTCCTTTACTTGGAGAATGTCCTTGTGCTTTTTGTGAGATAA 1560 0.3878 MRINPTTSGPEISVLEKKNLGRIDQIIGPVLDVAFPPGKMPNIYNALVVKGRDIVGQQINVTCEVQQLLGNNRVRAVAMSATDGLMRGMEVIDTGAPLSVPVGGATLGRIFNVLGEPIDNLGPVDTRTTSPIHRSAPAFIQLDTKLSIFETGIKVVDLLAPYRRGGKIGLFGGAGVGSHAVRALWHNNGKYPKEKTCIETPLLLQHNQKHHYTCDQTKRKHFVNATHAQSKNEPESQADSAKPIWNSIKDVMHTIQKFSVFYALIGLLSGILFSSLLAVEKLSDLSPTFFISMLQINKPYRPLASSKISFGGGLAIVAASLFMSFGLALMIGSKPLLWGLILIFILMTAYSVNLPFLRWKKSTTLTLLSGVPTILTAYNLAPYLHMKTFVLKKPFIFTRSLAFTTVVMTFFYVVISLFKDIPDIEGDKKEGLQTLSIRLGPKRVFWLCISLLEMTYGIGIILGLTSPFLWSKIFTVMAHAINAWILWFRANSVDLKSKEDFQSFYQLLYLENVLVLFVR 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g00668 519 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 99 181 IPR027417 -
Aip01g00668 519 PANTHER ATP SYNTHASE 1 178 - -
Aip01g00668 519 Gene3D UbiA prenyltransferase 401 518 - -
Aip01g00668 519 Gene3D - 98 228 IPR027417 -
Aip01g00668 519 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 19 97 IPR036121 GO:0046034|GO:1902600
Aip01g00668 519 Gene3D UbiA prenyltransferase 262 382 IPR044878 -
Aip01g00668 519 Pfam ATP synthase alpha/beta family, beta-barrel domain 25 95 IPR004100 GO:0046034|GO:1902600
Aip01g00668 519 Gene3D - 18 97 - -
Aip01g00668 519 Pfam UbiA prenyltransferase family 297 507 IPR000537 GO:0016021|GO:0016765
Aip01g00668 519 PANTHER F0F1-TYPE ATP SYNTHASE, BETA SUBUNIT 1 178 - -
Aip01g00668 519 CDD ATP-synt_F1_beta_N 19 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g00668 Aip-Chr1 10693059 10701583 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g00668 94 183 Primary Pumps ATPases(2) AT1G20260 33.673 8.36e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g00668 K02112 - vvi:4025008 341.273