Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g00657 ATGATATCCATAAGCAAGCCCGAAAGGCCTGCTCATGGAGAGGTGCTAGTACAGCAGTATATGTATTTGTCAGATGAGGAGGCAAAATATACACGCCAGGAGGATATCCTAGAGGGCCCTCCAGTTACTATCCAACAAGATGTCTCATCACCCATATTTTTTGCTGGGCATGAGGCGGATATTGCTAGGGATTTCATGCCAGGGCCGGCCTTGTTATTGGATGAGGCACTCTCCAGACCTTTCAATGATGTGGATGCATTTCTGGTTCATGGGGAGCTTGTTCAGGCAATTAAGGATGCAGAGGAAGGACTTCTTCACCTAAAACGGGCAAGATTATTACAGGAAGCAGATTTGGTGTTGCACAGCACTAATCTTTTTGCTGAAGAAGAGAAAGTAGAGGCTCTTGACCCCACAGATGAACCAGAGCCACTGGAGGAAAGTTGTTATTCTGTTGGATCTAAATGCAGATTCCGTCACAAAGATGGGAGATGGTACAATGGTCAAGTGGTACAGTTGGATAAGTCAGCAGCGAAACTTTCATTCCTTACTCCTACATCTGAGAACATGCTGATCTGCAAGTTCTTTTTACAACAACGATGTCGATTTGGTACTAACTGTCGCCTGTCACATGGAGTTGATGTTCAATTGTCCTCACTGAAGAAATATGTCCCAACAATATGGAAGCCATCCTTGGTGGGGTCGAGTATATGGGCAGTCTCAAATGCTCATGCGGGCATTTGGAAGCGAGCTGAGCTCGAGTCTTGGGACGAGGATGTCGGAGCTGGACAAGTTGTTTTCCGAGATGATGGAAGTTCAGCAAAGCTTGGGGCTGAAGAAATGGTATTGTCTGAGTATGCGGAAGTGAGTGACACAGAGAGTGATTCCAGCTTAGAAAACTCCGACTCTAGTGACTATGAGGAAGAGGAATCACAAGGTTTAGGATTTCTTGAGAGCACCAACCTACAAAGGGGTGTTCAGACCGAAACTGCTATATTTGCCAAGTGGGAGAACCACACTAGAGGCGTAGCATCGAAAATGATGGCTAATATGGGTTACCGAGAAGGAATGGGTTTAGGCATAACTGGTCAGGGGATGCTAGATCCCATAACAGTGAAAGTCCTACCGGCAAAGCAATCGTTAGATCATGCACTTGAGTCTCAAAAAGGAGAAGAGGATACAGAGAAACAAAGCAAGAAACGGAGCCGTGGTGGTAAAAGAAAGCGCGATAAGAAATTAATGGAAGCAATTCGAGCAGCAAAAGAAGACGACGAATCGAATGTAGACGTCTTTACACTAATAAATAATCAACTGGCAGTGCACGGCCAAGCTTTAAATGGTGGATCAGGGAAAAAGCAGAGCAAAGATTCCGCAGAAGGTAAAAAGGTGGATAGGCGAACGTTGATTGCGTATGAGGATGAGGTGAAGGATTTGAAGTTGAGGGTTGAGAAGCTGGAAGCAATAGTGAATATCAACAGAAAAGAGAAGGCTGTTTATGAGGCTGCTATGAGAAAATTAGCAGAGACACGCAAGGCATTAGCCGAAGCTGAAGCCACGCATGCCTCTGCATCGAATGCAGTTGTTAGCAAAGAAAAAGAGAAGAGATGGCTTAAGTTTTAG 1617 0.4508 MISISKPERPAHGEVLVQQYMYLSDEEAKYTRQEDILEGPPVTIQQDVSSPIFFAGHEADIARDFMPGPALLLDEALSRPFNDVDAFLVHGELVQAIKDAEEGLLHLKRARLLQEADLVLHSTNLFAEEEKVEALDPTDEPEPLEESCYSVGSKCRFRHKDGRWYNGQVVQLDKSAAKLSFLTPTSENMLICKFFLQQRCRFGTNCRLSHGVDVQLSSLKKYVPTIWKPSLVGSSIWAVSNAHAGIWKRAELESWDEDVGAGQVVFRDDGSSAKLGAEEMVLSEYAEVSDTESDSSLENSDSSDYEEEESQGLGFLESTNLQRGVQTETAIFAKWENHTRGVASKMMANMGYREGMGLGITGQGMLDPITVKVLPAKQSLDHALESQKGEEDTEKQSKKRSRGGKRKRDKKLMEAIRAAKEDDESNVDVFTLINNQLAVHGQALNGGSGKKQSKDSAEGKKVDRRTLIAYEDEVKDLKLRVEKLEAIVNINRKEKAVYEAAMRKLAETRKALAEAEATHASASNAVVSKEKEKRWLKF 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g00657 538 SMART G-patch_5 337 383 IPR000467 GO:0003676
Aip01g00657 538 Coils Coil 498 532 - -
Aip01g00657 538 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 22 73 538 - -
Aip01g00657 538 Coils Coil 467 494 - -
Aip01g00657 538 Pfam G-patch domain 339 381 IPR000467 GO:0003676
Aip01g00657 538 MobiDBLite consensus disorder prediction 286 319 - -
Aip01g00657 538 MobiDBLite consensus disorder prediction 517 538 - -
Aip01g00657 538 Gene3D - 152 223 - -
Aip01g00657 538 SUPERFAMILY CCCH zinc finger 187 211 IPR036855 GO:0046872
Aip01g00657 538 Pfam CCCH-type zinc finger 191 211 IPR041367 -
Aip01g00657 538 MobiDBLite consensus disorder prediction 297 311 - -
Aip01g00657 538 ProSiteProfiles Zinc finger C3H1-type profile. 186 213 IPR000571 GO:0046872
Aip01g00657 538 MobiDBLite consensus disorder prediction 383 399 - -
Aip01g00657 538 ProSiteProfiles G-patch domain profile. 339 385 IPR000467 GO:0003676
Aip01g00657 538 SMART c3hfinal6 186 212 IPR000571 GO:0046872
Aip01g00657 538 MobiDBLite consensus disorder prediction 383 411 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Aip01g00657 G-patch 2.4e-11 CL0449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g00657 - - gmx:100796284 682.174