Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g00645 atggaatccagagtcgccccttttcacaACGACGACTCTGTCCGACGAAACGGTTACGCTTTAGTGCTCCTTCCTGGTGCCGCTCTTGTACGCTACTTTCCTTTGTACATCGCCATCTTCCCGAAAAACGACGTCGTATCCATCACCCTCCATCGGAAGAAAACCCGATTCCTTCCTCTTAATTCCGAAACCCTACTTATAATTCGTCCCAAATTTAGTAGACCAATGGCATCGTCATCAGACTCATGGATGAAGGAATATAATGAAGCAGTGAAACTCGCCGATGATATCAATGGCATGATTTCTGAGCGGAGTTCATTATCAACATCTGGACCAGAAGCTCAGCGTCATGCATCTGCTATAAGAAGGAAGATTACTATCTTAGGGACCAGACTTGATAGCTTGCAATCCCTTTTATCTAAAGTCCCTGGAAAATCTGAGAAGGAGATGAATCGCCGCAGGGAAACACTTACAAATTTGAGGTCAAAAGTTAACCAAATGGCTTCAACACTGAACATGTCAAACTTTGCAAATAGGGATAGTTTATTTGGTCCTGAAATAAAACCAGATGCAATGAGCAGAACTGTTGGCCTGGATAACAGTGGACTCGTTGGACTTCAAAGGCAAATTATGAAAGCAGAGCAAGATGAAGGCCTTGAAAAATTGGAGGAGACTGTTGTAAGTACAAAGCACATTGCATTAGCAGTGAATGAAGAGCTGAGTCTACACACTAGACTAATTGATGACTTGGACGAACATGTAGATGTTACAGATTCTCGTCTAAGGCGTGTCCAGAAGAACTTGGCAGTTTTAAACAAACGTACCAAGGGTGGTTGCTCCTGCTTGTGCATGCTTTTAGCAGTGGTTGGGATAGTGGTTTTGGTGGTTGTGATATGGACCGAACCCAGTTTGAGTTACTACTTCGTATGCTTATCGACATCAAAGTCCACACCTCCTTCTGCTCTCAAATTGTGCTTTTTTGTTCATAACTACAACCGCCTAAGCTCTGCTCGCATTGAAATCTGGGAGAGAGAGATGAGCACGGTCCCAAAAGAAACGATCGAAGTGATAGCACAGAGCATTGGCATCACGAATCTGTCCCCTGATGTTGCCTTCGCTCTCGCCCCCGATCTCGAGTATCGAATTCGCGAAATCATGCAGGAGTCCATAAAATGCATGCGTCACTCAAAGAGAACTATTCTTACAGCAGATGATGTTGATAGTGCACTTGCATTGAGAAATTTAGAGCCAATATATGGTTTCACCTCTAACGACCCTTTGCGGTTCAAAAGAGCTGCTGGACACAAGGATTTGTTCTACATTGATGACAAAGATGTGGAATTTAAAGATCTGATTGAAGCACCGTTACCAAAAGCTCCGCTTGATACATCAATTACCAGTCATTGGCTGGCTATTGAAGGTGTACAACCTGCAATTCCTGAGAATGCTCCAGTTGAAGCTCCCACAGAAATAAGAAAATCGTCTGAGTATAAGGAAGATGGGATTCCAGTTGACATTAAATTACCTGTTAAACACGTAATAACAAAGGAGCTTCAGCTTTACTTTGACAAAATAACTGAGCTAGTTCTAAATAAGCCTGCTTCTATTCCCTTTAGAAGGGCACTAATTAGTTTGGCAACAGACATGGGACTCCATCCTTTGGTTCCTTATTTCTCACGCTTTGTAGCTGATGAGGTGGCACAAAACTTGCATAATTTAACACTTTTATTTGCCTTGATGCGTCTTGTCCGGAGCATTCTACAAAATCCTCACATACATATAGAGCTTTATTTACATCAATTGATGCCACCTATCATTACCTGTGTTGTTGCAAAAAGGATTGGAAACAGACTATCTGATAATCACTGGGAGCTTAGGAACTTCAGTGTTAATCTTGTTGCTTCAATATGCAAAAGATTTGGGAATGTTTATCATAATCTTCAGCCACGAGTGACAAAGACTTTTCTTCATGCATTTTTGGACCCAACTAAAGCTCTACCTCAGCACTATGGTGCAATTAAAGGAATAGCAGCTCTTGGATCAAGACTGGTTCGCTTGTTTATACTTCCAAACCTTGAGCCATATTTGCTTCTCCTCGAGCCGGAAATGCAACCAGAGAAACAGAGAAATGAAACAAAGAGGCAGGAAGCATGGCAAGTATATGGGGCCTTGTTGTGTGCTGTTGGACAATGTATGCATGAAAGGGCCAAAATCTTCAGCAATTTGCTCTCTCCTCCAACACGTGCTTCTTCTAGACCCAATGGAAAAGCCATGATTGCTATGTCAAGCAAACGTAAAGCCAGCACAGAAAACCTAATGCAGCAGCAGCAACCTCCATTGAAGAAACTTGCCACGGATGCCCCCGGGGGTGTGGTACCAATGAACTCCATGTCTGTTGACATGCAAATGCAAGGGTCAGCAGGTGCATTTTCGACCATGATGGGGGTTCCAAATGTTGGCGCGTCATCGATGGCTCGGCAGATATCTAATGACAACACAATGGGGAGAGAGGTTGGCGGTCAACAATCGAAGGTATCTTCCATTCTCGCTCAAGCCTGGAAGGATGACATCGATGCAGGACAATTACTGTCATCGGTGTATGAATTATTTGGTGAAAGTTTGTTATCCTTTATTCCAAAAGCTGAAGCAGGTGTATTTTTGTAA 2664 0.4249 MESRVAPFHNDDSVRRNGYALVLLPGAALVRYFPLYIAIFPKNDVVSITLHRKKTRFLPLNSETLLIIRPKFSRPMASSSDSWMKEYNEAVKLADDINGMISERSSLSTSGPEAQRHASAIRRKITILGTRLDSLQSLLSKVPGKSEKEMNRRRETLTNLRSKVNQMASTLNMSNFANRDSLFGPEIKPDAMSRTVGLDNSGLVGLQRQIMKAEQDEGLEKLEETVVSTKHIALAVNEELSLHTRLIDDLDEHVDVTDSRLRRVQKNLAVLNKRTKGGCSCLCMLLAVVGIVVLVVVIWTEPSLSYYFVCLSTSKSTPPSALKLCFFVHNYNRLSSARIEIWEREMSTVPKETIEVIAQSIGITNLSPDVAFALAPDLEYRIREIMQESIKCMRHSKRTILTADDVDSALALRNLEPIYGFTSNDPLRFKRAAGHKDLFYIDDKDVEFKDLIEAPLPKAPLDTSITSHWLAIEGVQPAIPENAPVEAPTEIRKSSEYKEDGIPVDIKLPVKHVITKELQLYFDKITELVLNKPASIPFRRALISLATDMGLHPLVPYFSRFVADEVAQNLHNLTLLFALMRLVRSILQNPHIHIELYLHQLMPPIITCVVAKRIGNRLSDNHWELRNFSVNLVASICKRFGNVYHNLQPRVTKTFLHAFLDPTKALPQHYGAIKGIAALGSRLVRLFILPNLEPYLLLLEPEMQPEKQRNETKRQEAWQVYGALLCAVGQCMHERAKIFSNLLSPPTRASSRPNGKAMIAMSSKRKASTENLMQQQQPPLKKLATDAPGGVVPMNSMSVDMQMQGSAGAFSTMMGVPNVGASSMARQISNDNTMGREVGGQQSKVSSILAQAWKDDIDAGQLLSSVYELFGESLLSFIPKAEAGVFL 887
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g00645 887 Pfam TAF6 C-terminal HEAT repeat domain 605 692 IPR011442 GO:0006367
Aip01g00645 887 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 6 346 887 IPR037796 GO:0000124|GO:0005669|GO:0006367|GO:0016251|GO:0046695
Aip01g00645 887 CDD SNARE_Qc 212 269 - -
Aip01g00645 887 CDD TAF6C 511 727 IPR011442 GO:0006367
Aip01g00645 887 Gene3D - 213 273 - -
Aip01g00645 887 Pfam SNARE domain 246 297 IPR000727 -
Aip01g00645 887 SMART tSNARE_6 204 271 IPR000727 -
Aip01g00645 887 Gene3D Histone, subunit A 345 411 IPR009072 GO:0046982
Aip01g00645 887 Gene3D - 510 715 IPR046344 GO:0006367
Aip01g00645 887 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 209 271 IPR000727 -
Aip01g00645 887 SMART TAF_cls 347 413 IPR004823 -
Aip01g00645 887 Pfam TATA box binding protein associated factor (TAF) 346 410 IPR004823 -
Aip01g00645 887 SUPERFAMILY ARM repeat 540 732 IPR016024 -
Aip01g00645 887 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 6 346 887 - -
Aip01g00645 887 SUPERFAMILY SNARE fusion complex 206 270 - -
Aip01g00645 887 SUPERFAMILY Histone-fold 346 410 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g00645 Aip-Chr1 10051957 10064406 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g00645 76 299 SNARE and Associated Proteins AT1G16240 73.128 3.38e-111 338
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g00645 K03131 - gmx:100799998 840.491
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g00645 01 10051957 10064406 Aip01g00645 01 10051957 10064406 ECH