Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g00633 ATGGAGGTTTCTTCTGCAAAATGGGTTCTCAATGCTTGCTTGTTGCTGCTCTTTGTGCTCCTCATTGGAGAAGCCATGGCCACATCACAGATCTCTGACCTCAAGGTGAAAGAGGCGGAGGAATTAAATGAACGTGCTGCTGTAACTGACCCGGAAGAGGTGGTTTCCATGGTTCAGATGGCAATGAAGAATAGCACTGAGAGAAGGAAGCTAGGATTCTTCTCCTGTGGAACTGGTAATCCAATCGACGATTGCTGGCGCTGCGACCCGAATTGGCAGAAAAACAGGAAGAGACTAGCAGATTGTGGCATTGGTTTCGGCCGGAATGCGATCGGTGGCCGCGACGGAAAGTTCTATGTTGTAACTGACCCTAGAGATGATGACCCTGTTAACCCAAAGCCAGGGACATTGCGGCACGCGGTGATCCAGGACAGGCCACTATGGATTGTGTTCAAAAGGGACATGGTGATCCAGCTGAAACAGGAGCTGATTATGAACAGCTTCAAGACCATTGATGGAAGAGGAGCCAATGTGCACATTGCCAATGGAGGTTGCATAACAATTCAGTATGTTACCAATGTCATCATCCATGGTCTCCATATCCATGACTGCAGGCCTACTGGGAATGCCATGGTGAGAAGCTCCCCCACCCATTTCGGGTGGAGGACTATGGCTGATGGGGATGCCATCTCCATTTTTGGATCAAGCCATATTTGGGTTGATCATAATTCATTGTCACATTGTGCTGATGGCCTTGTTGATGCTGTCATGGGCTCAACTGCTATAACTATTTCTAACAACCATCTCACCCACCACAATGAGGTGATTCTGTTAGGCCACAGTGACTCATACACAAGAGACAAGCAAATGCAGGTGACCATTGCCTATAACCATTTTGGAGAAGGACTCATCCAGAGAATGCCAAGATGTAGACATGGGTATTTCCATGTGGTGAACAATGACTATACTCATTGGGAGATGTATGCAATTGGTGGAAGTGCTAACCCCACCATCAACAGCCAGGGCAATAGATACAATGCTCCAGCTAACCCATTTGCTAAAGAGGTGACAAAGAGAGTGGAAACAGCTGAAACGCAATGGAAGGGTTGGAATTGGAGATCAGAGGGAGATTTATTGCTGAATGGTGCATACTTCACTCCATCAGGTGCTGGAGCTTCAGCAAGCTATGCAAGAGCCTCAAGCTTAGGTGCCAAATCATCTTCCATGGTTGGTTCCATGACTTCTAATGCTGGTGCACTTGGCTGCAAAAGAGGCCGTCGGTGCTAG 1287 0.4771 MEVSSAKWVLNACLLLLFVLLIGEAMATSQISDLKVKEAEELNERAAVTDPEEVVSMVQMAMKNSTERRKLGFFSCGTGNPIDDCWRCDPNWQKNRKRLADCGIGFGRNAIGGRDGKFYVVTDPRDDDPVNPKPGTLRHAVIQDRPLWIVFKRDMVIQLKQELIMNSFKTIDGRGANVHIANGGCITIQYVTNVIIHGLHIHDCRPTGNAMVRSSPTHFGWRTMADGDAISIFGSSHIWVDHNSLSHCADGLVDAVMGSTAITISNNHLTHHNEVILLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYNAPANPFAKEVTKRVETAETQWKGWNWRSEGDLLLNGAYFTPSGAGASASYARASSLGAKSSSMVGSMTSNAGALGCKRGRRC 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g00633 428 PRINTS Pollen allergen Amb family signature 102 119 IPR018082 -
Aip01g00633 428 PRINTS Pollen allergen Amb family signature 126 151 IPR018082 -
Aip01g00633 428 PRINTS Pollen allergen Amb family signature 162 178 IPR018082 -
Aip01g00633 428 PRINTS Pollen allergen Amb family signature 226 247 IPR018082 -
Aip01g00633 428 PRINTS Pollen allergen Amb family signature 306 325 IPR018082 -
Aip01g00633 428 PRINTS Pollen allergen Amb family signature 328 347 IPR018082 -
Aip01g00633 428 PRINTS Pollen allergen Amb family signature 370 394 IPR018082 -
Aip01g00633 428 PRINTS Pollen allergen Amb family signature 399 422 IPR018082 -
Aip01g00633 428 Pfam Pectate lyase 161 343 IPR002022 -
Aip01g00633 428 Gene3D - 79 421 IPR012334 -
Aip01g00633 428 SUPERFAMILY Pectin lyase-like 56 422 IPR011050 -
Aip01g00633 428 SMART amb_all 154 351 IPR002022 -
Aip01g00633 428 PANTHER PECTATE LYASE 34 425 - -
Aip01g00633 428 PANTHER PECTATE LYASE 18-RELATED 34 425 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g00633 Aip-Chr1 9606925 9611557 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g00633 8 428 Polysaccharide Lyase AT1G04680 81.647 0.0 712
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g00633 K01728 - gmx:100808253 793.112