Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g00611 ATGGGTATCTCTCGTGATTCTATGCACAAGAGGCGCGCCACTGGTGGCAAGAAGAAGGTTTGGAGGAAGAAGAGAAAGTATGAGCTTGGAAGGCAACCAGCAAACACAAAGCTCTCCAGCAACAAAACTGTTAGGAGGATCAGGGTTCGAGGTGGGAATGTAAAATGGCGTGCTTTGAGGCTTGACACTGGGAACTACTCTTGGGGTAGTGAAGCTGTGACTCGCAAAACGAGGATTCTCGATGTGGTGTATAATGCATCCAACAATGAACTTGTTCGAACTCAGACTTTGGTCAAGAGTGCCATCGTCCAGGTTGATGCTGCACCTTTCAAACAATGGTATCTCCAGCATTATGGTGTCGACATTGGTCGCAAGAAGAAGAGTGCAACTTCTGGCAAGAAAGAAGGGGAGGATGCTGAAACTGCAACCGAAGAAGTGAAGAAGAGTAACCATGTCTTGAGAAAGTTGGAGAAGCGTAAACAAACCCGGGTGCTTGATCCTCACATTGAAGAACAATTTGGAAGTGGTCGCCTCTTGGCTAGTATCTCATCCCGCCCCGGTCAATGTGGTCGTGCTGATGGATATATATTGGAGGGCAAAGAGCTTGAGTTCTACATGAAGAAGCTTCAGAAAAAGAAGGGCAAGGGTGCTGCTTAA 657 0.4718 MGISRDSMHKRRATGGKKKVWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRKKKSATSGKKEGEDAETATEEVKKSNHVLRKLEKRKQTRVLDPHIEEQFGSGRLLASISSRPGQCGRADGYILEGKELEFYMKKLQKKKGKGAA 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g00611 218 PANTHER 40S RIBOSOMAL PROTEIN S8 1 218 IPR001047 GO:0003735|GO:0005840|GO:0006412
Aip01g00611 218 TIGRFAM eS8: ribosomal protein eS8 1 199 IPR001047 GO:0003735|GO:0005840|GO:0006412
Aip01g00611 218 PANTHER 40S RIBOSOMAL PROTEIN S8 1 218 - -
Aip01g00611 218 Pfam Ribosomal protein S8e 5 197 IPR022309 -
Aip01g00611 218 ProSitePatterns Ribosomal protein S8e signature. 11 30 IPR018283 GO:0003735|GO:0005840|GO:0006412
Aip01g00611 218 MobiDBLite consensus disorder prediction 1 22 - -
Aip01g00611 218 Gene3D - 162 215 - -
Aip01g00611 218 Gene3D - 32 161 - -
Aip01g00611 218 CDD Ribosomal_S8e_like 5 197 - -
Aip01g00611 218 Coils Coil 139 159 - -
Aip01g00611 218 MobiDBLite consensus disorder prediction 125 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g00611 Aip-Chr1 9270686 9272955 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g00611 1 206 Cytoplasmic Ribosomal Protein Gene Family AT5G59240 85.437 1.69e-126 354
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g00611 K02995 - gmx:100527325 381.333
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g00611 01 9270686 9272955 Aip01g00611 01 9270686 9272955 ECH